View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1430_low_16 (Length: 331)

Name: NF1430_low_16
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1430_low_16
NF1430_low_16
[»] chr4 (7 HSPs)
chr4 (20-310)||(3670680-3670972)
chr4 (95-126)||(49211849-49211880)
chr4 (98-132)||(55157627-55157661)
chr4 (98-127)||(3673427-3673456)
chr4 (98-126)||(8179912-8179940)
chr4 (98-126)||(24972272-24972300)
chr4 (98-126)||(48007294-48007322)
[»] chr8 (3 HSPs)
chr8 (210-310)||(9891822-9891921)
chr8 (125-183)||(9891982-9892040)
chr8 (98-126)||(8051935-8051963)
[»] chr7 (4 HSPs)
chr7 (95-126)||(4125478-4125509)
chr7 (95-126)||(24507866-24507897)
chr7 (98-126)||(4125745-4125773)
chr7 (98-126)||(13298777-13298805)
[»] chr5 (3 HSPs)
chr5 (95-126)||(7725536-7725567)
chr5 (98-126)||(8383971-8383999)
chr5 (98-126)||(38378220-38378248)
[»] scaffold0276 (1 HSPs)
scaffold0276 (96-126)||(2109-2139)
[»] chr6 (1 HSPs)
chr6 (98-126)||(17945301-17945329)
[»] chr3 (1 HSPs)
chr3 (98-126)||(22200607-22200635)
[»] chr2 (1 HSPs)
chr2 (98-126)||(18176881-18176909)
[»] chr1 (8 HSPs)
chr1 (98-126)||(10544172-10544200)
chr1 (98-126)||(17414743-17414771)
chr1 (98-126)||(17415358-17415386)
chr1 (98-126)||(18459589-18459617)
chr1 (98-126)||(18459751-18459779)
chr1 (98-126)||(33024673-33024701)
chr1 (98-126)||(49915876-49915904)
chr1 (98-126)||(52053867-52053895)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 3670680 - 3670972
Alignment:
Q  20 ccacttatcatgcatgcttttgcgtatattataggaattctagtctaagaaattgttatatacatctactaatttaactattagaatataaaatattcat 119  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||    
T  3670680 ccacttatcatgcatgcttttgtgtatattataggaattctagtctaagaagttgttatagacatctactaatttaactattagaatataaaatatccat 3670779  T
Q  120 tgtataatttgtttattttctaattaactttcgtgtaataatagttttcatttaaataacaaaatgtattttatt--nnnnnnngaaaacaaagacaggc 217  Q
    || ||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||          |||| ||| ||||||    
T  3670780 tgcataatttatttatttcctaattaacttttgtgtaatattagttttcatttaaataacaaaatgtattttattaaaaaaaaaaaaaaaaaaaacaggc 3670879  T
Q  218 acgagaatgcccatcttacacactagttaccaataaaaactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtca 310  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670880 acgagaatgcccatcttacacactagttgtcaataaaaactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtca 3670972  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 49211880 - 49211849
Alignment:
Q  95 aactattagaatataaaatattcattgtataa 126  Q
    ||||||||||||||||||||||||||||||||    
T  49211880 aactattagaatataaaatattcattgtataa 49211849  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 55157627 - 55157661
Alignment:
Q  98 tattagaatataaaatattcattgtataatttgtt 132  Q
    ||||||||||||||||||||||||||||| |||||    
T  55157627 tattagaatataaaatattcattgtataaattgtt 55157661  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 3673456 - 3673427
Alignment:
Q  98 tattagaatataaaatattcattgtataat 127  Q
    ||||||||||||||||||||||||||||||    
T  3673456 tattagaatataaaatattcattgtataat 3673427  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 8179940 - 8179912
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  8179940 tattagaatataaaatattcattgtataa 8179912  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 24972300 - 24972272
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  24972300 tattagaatataaaatattcattgtataa 24972272  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 48007322 - 48007294
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  48007322 tattagaatataaaatattcattgtataa 48007294  T

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Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 210 - 310
Target Start/End: Complemental strand, 9891921 - 9891822
Alignment:
Q  210 agacaggcacgagaatgcccatcttacacactagttaccaataaaaactacgactcaataaaggatagaatccaagctggcatcaaagaaaccactcgtc 309  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||    
T  9891921 agacaggcacgagaatggccatcttacacactagttaccaataaaaactacaacttaataaaggatagaatccaagct-gcatcaaagaaaccactcgtc 9891823  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 9891982 - 9892040
Alignment:
Q  125 aatttgtttattttctaattaactttcgtgtaataatagttttcatttaaataacaaaa 183  Q
    ||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||||    
T  9891982 aatttatttatttcctaattaacttttgtgtaatattagttttcatttaaataacaaaa 9892040  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 8051963 - 8051935
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  8051963 tattagaatataaaatattcattgtataa 8051935  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 126
Target Start/End: Original strand, 4125478 - 4125509
Alignment:
Q  95 aactattagaatataaaatattcattgtataa 126  Q
    ||||||||||||||||||||||||||||||||    
T  4125478 aactattagaatataaaatattcattgtataa 4125509  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 24507897 - 24507866
Alignment:
Q  95 aactattagaatataaaatattcattgtataa 126  Q
    ||||||||||||||||||||||||||||||||    
T  24507897 aactattagaatataaaatattcattgtataa 24507866  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 4125773 - 4125745
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  4125773 tattagaatataaaatattcattgtataa 4125745  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 13298777 - 13298805
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  13298777 tattagaatataaaatattcattgtataa 13298805  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 126
Target Start/End: Original strand, 7725536 - 7725567
Alignment:
Q  95 aactattagaatataaaatattcattgtataa 126  Q
    ||||||||||||||||||||||||||||||||    
T  7725536 aactattagaatataaaatattcattgtataa 7725567  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 8383971 - 8383999
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  8383971 tattagaatataaaatattcattgtataa 8383999  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 38378220 - 38378248
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  38378220 tattagaatataaaatattcattgtataa 38378248  T

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Target: scaffold0276 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 126
Target Start/End: Complemental strand, 2139 - 2109
Alignment:
Q  96 actattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||||    
T  2139 actattagaatataaaatattcattgtataa 2109  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 17945329 - 17945301
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  17945329 tattagaatataaaatattcattgtataa 17945301  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 22200607 - 22200635
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  22200607 tattagaatataaaatattcattgtataa 22200635  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 18176909 - 18176881
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  18176909 tattagaatataaaatattcattgtataa 18176881  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 10544200 - 10544172
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  10544200 tattagaatataaaatattcattgtataa 10544172  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 17414743 - 17414771
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  17414743 tattagaatataaaatattcattgtataa 17414771  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 17415386 - 17415358
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  17415386 tattagaatataaaatattcattgtataa 17415358  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 18459617 - 18459589
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  18459617 tattagaatataaaatattcattgtataa 18459589  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 18459779 - 18459751
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  18459779 tattagaatataaaatattcattgtataa 18459751  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 33024673 - 33024701
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  33024673 tattagaatataaaatattcattgtataa 33024701  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 49915876 - 49915904
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  49915876 tattagaatataaaatattcattgtataa 49915904  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 52053895 - 52053867
Alignment:
Q  98 tattagaatataaaatattcattgtataa 126  Q
    |||||||||||||||||||||||||||||    
T  52053895 tattagaatataaaatattcattgtataa 52053867  T

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