View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1430_low_2 (Length: 1423)

Name: NF1430_low_2
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1430_low_2
NF1430_low_2
[»] chr4 (30 HSPs)
chr4 (530-1405)||(8999559-9000439)
chr4 (856-1406)||(9030684-9031234)
chr4 (643-1025)||(9014008-9014390)
chr4 (852-1405)||(8979171-8979723)
chr4 (863-1406)||(8954834-8955376)
chr4 (22-403)||(8998131-8998523)
chr4 (896-1383)||(8900342-8900829)
chr4 (894-1406)||(8966018-8966530)
chr4 (896-1383)||(8914247-8914734)
chr4 (894-1342)||(8929167-8929615)
chr4 (345-532)||(8998562-8998752)
chr4 (530-801)||(25275647-25275918)
chr4 (11-128)||(8997991-8998108)
chr4 (530-740)||(36692253-36692465)
chr4 (530-688)||(8111676-8111835)
chr4 (530-717)||(53218821-53219009)
chr4 (530-619)||(9014391-9014482)
chr4 (547-674)||(48336747-48336876)
chr4 (534-801)||(52678760-52679028)
chr4 (530-762)||(10015938-10016171)
chr4 (670-793)||(23605237-23605359)
chr4 (530-592)||(11523680-11523742)
chr4 (381-427)||(11697393-11697439)
chr4 (530-592)||(46467299-46467361)
chr4 (733-794)||(42576336-42576397)
chr4 (382-427)||(51205668-51205713)
chr4 (381-424)||(37937138-37937181)
chr4 (530-592)||(42576079-42576141)
chr4 (548-585)||(20956403-20956440)
chr4 (530-587)||(37148964-37149021)
[»] chr5 (15 HSPs)
chr5 (896-1383)||(20073801-20074288)
chr5 (891-1383)||(9400034-9400526)
chr5 (530-791)||(36417280-36417536)
chr5 (547-813)||(6439167-6439433)
chr5 (561-787)||(31766343-31766573)
chr5 (547-689)||(15679038-15679182)
chr5 (530-721)||(29834806-29834998)
chr5 (263-314)||(20220142-20220193)
chr5 (530-592)||(16983080-16983142)
chr5 (381-434)||(11443853-11443906)
chr5 (261-314)||(3535927-3535980)
chr5 (381-417)||(39986635-39986671)
chr5 (545-592)||(15681235-15681282)
chr5 (381-427)||(513930-513976)
chr5 (530-592)||(25974568-25974630)
[»] chr7 (5 HSPs)
chr7 (530-814)||(46981941-46982230)
chr7 (530-747)||(25183525-25183743)
chr7 (385-434)||(35120164-35120213)
chr7 (907-983)||(3629956-3630032)
chr7 (264-314)||(22919573-22919621)
[»] chr8 (13 HSPs)
chr8 (530-797)||(4204635-4204902)
chr8 (530-691)||(7220750-7220912)
chr8 (530-661)||(4805959-4806092)
chr8 (545-658)||(1151051-1151166)
chr8 (530-658)||(13318854-13318984)
chr8 (534-592)||(23405378-23405436)
chr8 (261-313)||(14011029-14011081)
chr8 (609-688)||(11993002-11993080)
chr8 (262-301)||(36593258-36593297)
chr8 (439-477)||(6277864-6277902)
chr8 (381-427)||(9712199-9712245)
chr8 (241-310)||(39208839-39208909)
chr8 (530-575)||(11465074-11465119)
[»] chr6 (6 HSPs)
chr6 (530-791)||(2344090-2344351)
chr6 (530-627)||(15603137-15603236)
chr6 (602-671)||(20473955-20474024)
chr6 (381-427)||(8416294-8416340)
chr6 (261-314)||(17347305-17347358)
chr6 (261-314)||(29204860-29204913)
[»] chr3 (16 HSPs)
chr3 (530-801)||(50090010-50090280)
chr3 (533-720)||(46068522-46068710)
chr3 (571-798)||(23655956-23656180)
chr3 (530-607)||(36823811-36823890)
chr3 (561-688)||(28817542-28817670)
chr3 (646-759)||(36794436-36794548)
chr3 (553-617)||(51814162-51814228)
chr3 (703-791)||(51813993-51814080)
chr3 (546-592)||(52318898-52318944)
chr3 (261-294)||(33162132-33162165)
chr3 (531-592)||(41240353-41240414)
chr3 (703-796)||(46535001-46535093)
chr3 (262-314)||(37707636-37707688)
chr3 (381-427)||(32278092-32278138)
chr3 (381-427)||(34430463-34430509)
chr3 (261-314)||(28951917-28951970)
[»] chr1 (21 HSPs)
chr1 (530-800)||(38143666-38143934)
chr1 (594-755)||(43804745-43804905)
chr1 (530-661)||(16870615-16870749)
chr1 (590-669)||(16216065-16216144)
chr1 (530-592)||(39779858-39779920)
chr1 (530-592)||(47683208-47683270)
chr1 (263-312)||(1576114-1576163)
chr1 (387-480)||(46073240-46073333)
chr1 (381-489)||(41816617-41816725)
chr1 (531-586)||(92343-92398)
chr1 (381-424)||(516875-516918)
chr1 (609-656)||(39779723-39779770)
chr1 (261-314)||(37262097-37262151)
chr1 (381-427)||(37492672-37492718)
chr1 (264-314)||(43020662-43020712)
chr1 (241-301)||(2643785-2643846)
chr1 (610-691)||(3231268-3231348)
chr1 (261-314)||(9769571-9769624)
chr1 (261-314)||(16182860-16182913)
chr1 (530-575)||(43804476-43804521)
chr1 (264-313)||(48260183-48260232)
[»] scaffold0204 (1 HSPs)
scaffold0204 (547-674)||(24269-24398)
[»] chr2 (7 HSPs)
chr2 (551-801)||(41890490-41890738)
chr2 (530-620)||(11808851-11808943)
chr2 (241-300)||(17896883-17896943)
chr2 (637-688)||(11808794-11808845)
chr2 (264-314)||(22014646-22014696)
chr2 (26-99)||(25333421-25333495)
chr2 (241-301)||(34107338-34107399)
[»] scaffold1436 (1 HSPs)
scaffold1436 (530-762)||(120-353)
[»] scaffold0287 (1 HSPs)
scaffold0287 (907-983)||(16053-16129)
[»] scaffold0064 (1 HSPs)
scaffold0064 (530-592)||(19636-19698)


Alignment Details
Target: chr4 (Bit Score: 666; Significance: 0; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 530 - 1405
Target Start/End: Original strand, 8999559 - 9000439
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa--gtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  8999559 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtgtctttatatttaaaaagtatggtagaaattattcaaaatttcatctcaaat 8999658  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagaga- 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||  ||||||||||||||||| |||||     
T  8999659 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaattttcgcataatgtgaggaatctattattttaagagagagag 8999758  T
Q  727 ---caaacattaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgcccccaatctactatacatggatccgtgattgagtaaa 823  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  8999759 agacaaacattaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgctcccaatctactatacatgtatccgtgactgagtaaa 8999858  T
Q  824 acacataaaaaagcctaataaacataacatattaaacatgaaaccaacatagtcacgataaaggtcatgcatctacatagggatcttggcaacaaggcaa 923  Q
    ||||||||||| || ||||||||||||||||||  ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  8999859 acacataaaaaggc-taataaacataacatattttacatgaaaccaacatagacatgataaaggtcatgcgtctacatagggatcttggcaacaaggcaa 8999957  T
Q  924 agaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaa 1023  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||| ||| ||| |||||||||||||||| ||||    
T  8999958 agaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttcctttactgttccatgtggcaatttccaatcaaatgaataaagaa 9000057  T
Q  1024 gattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagctccaaagggtattagttcaaaatcttgtccagt 1123  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9000058 gattggcaaggataagttccaatgaggcaactgccataggcatacctgggcaaattctacgaccagctccaaagggtattagttcaaaatcttgtccatt 9000157  T
Q  1124 aaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaatagcccaagcattcacatacaat 1223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  9000158 aaaatttatagaactttctaagaatctttcaggataaaattcttctggatttttccaaacattagggtctctctgaatagcccaagcattcacatacaat 9000257  T
Q  1224 attgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggggctggtagatgcaatcttaacgtctctt 1323  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||  || |  ||||||||||| |||||||||| ||||||||    
T  9000258 attgtcttggctggaatattgtatccacttatagtgcaattttcacgtgattctctttgcataagtagaggggctggtaggtgcaatcttagcgtctctt 9000357  T
Q  1324 taatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtcccaagtttctaatttc 1405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||    
T  9000358 taatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaaatctttttcacctcccaaatttctaatttc 9000439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 856 - 1406
Target Start/End: Complemental strand, 9031234 - 9030684
Alignment:
Q  856 taaacatgaaaccaacatagtc-acgataaaggtcatgcatctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctg 954  Q
    |||||| ||||||||||||||  || |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9031234 taaacaagaaaccaacatagtatactataaaggg-atgcatctacatagggatcttagcaacaaggcaaagaggattcttcttgtgttgagtgatccctg 9031136  T
Q  955 gcaacatttcagtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaac 1054  Q
    ||| ||||   |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |||||| |||||    
T  9031135 gcagcattgatgtatcaatatcttcctttaccaacccatctggtaatttccaatcaaatgaataaagaagattggcaaggataagtttcaatgaggcaac 9031036  T
Q  1055 tgccataggcatacctgggcaaattctacgaccagctccaaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttca 1154  Q
    |||||| || |  || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9031035 tgccatgggtaagccggggcaaattctacggccagctccaaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttca 9030936  T
Q  1155 ggataaaattcttctgcgttttcccaaacattatggtctctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccattta 1254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9030935 ggataaaattcttctgcgttttcccaaacattatggtctctctgaatagcccaagcattcacatacaatattgtcctggctggaatattgtatccattta 9030836  T
Q  1255 tagtgcaattttcacgtgattctctagacaggagcaatggggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttg 1354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9030835 tagtgcaattttcacgtgattctctagacaggagcaatggggctggtagatgcaatcttaacgtctctttaatcactgcattcaaataaggtaaattttg 9030736  T
Q  1355 aatatcatcttcatctaaaaattctttttcacgtcccaagtttctaatttct 1406  Q
    || |||| ||||||||||| | |||||| ||| |||||||||||| ||||||    
T  9030735 aagatcaccttcatctaaataatcttttgcacctcccaagtttctgatttct 9030684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 279; E-Value: 1e-155
Query Start/End: Original strand, 643 - 1025
Target Start/End: Complemental strand, 9014390 - 9014008
Alignment:
Q  643 attttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagacaaacattaaaatatc 742  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||  ||||  |  |||||||||||||||||| ||||||||||||||||||||     
T  9014390 attttataaaattcatgaacgaaactcttttttatgatataaattttcatttaataggggcaatctattattttaagagagagacaaacattaaaatatt 9014291  T
Q  743 aaaaacttaacaaatataaccataacagtagtggggacagttgcccccaatctactatacatggatccgtgattgagtaaaacacataaaaaagcctaat 842  Q
    ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9014290 aaaaatttaacaaatataaccgtaacagtagtggggatagttgcccccaatctactatacatggatccgtgactgagtaaaacacataaaaaagcctaat 9014191  T
Q  843 aaacataacatattaaacatgaaaccaacatagtcacgataaaggtcatgcatctacatagggatcttggcaacaaggcaaagaggattcttcttgtgtt 942  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9014190 aaacataacatattaaacatgaaaccaacatagtcacgataaaggtcatgcgtctacatagggatcttggcaacaaggcaaagaggattcttcttgtgtt 9014091  T
Q  943 gagtgatccctggcaacatttcagtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaaga 1025  Q
    |||||||||||||||||||||||||||||||||||| |||||     |||| ||| ||| |||||| ||||||||| ||||||    
T  9014090 gagtgatccctggcaacatttcagtatcaatatctttctttagtgttccatgtggcaatttccaattaaatgaataaagaaga 9014008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 852 - 1405
Target Start/End: Complemental strand, 8979723 - 8979171
Alignment:
Q  852 atattaaacatgaaaccaacatagtcacgataaaggtcatgcatctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatcc 951  Q
    |||||||||||||||| |||| ||| |  |||||||  || |||||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  8979723 atattaaacatgaaactaacaaagttaacataaaggg-atacatctaaatagggatattgggaacaaggtaaagaggattcttcttgtgttgagtgatcc 8979625  T
Q  952 ctggcaacatttcagtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgc 1051  Q
    ||||||||||||| |||||||||||||||||| | || || | ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8979624 ctggcaacatttcggtatcaatatcttccttttctaaaccttgtggcaatttccaatcaaaagaatagagaagattagcaaggataagttccaatgatgc 8979525  T
Q  1052 aactgccataggcatacctgggcaaattctacgaccagctccaaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctt 1151  Q
    ||||||||||| ||| || || ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||     
T  8979524 aactgccatagacatgccaggacaaattctacgaccagctccaaagggtattagttcgaaatcatgtccaataaaatttatagaactttctatgaatctc 8979425  T
Q  1152 tcaggataaaattcttctgcgttttcccaaacattatggtctctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccat 1251  Q
    || ||||||||||||||||  |||| ||||  |||| | ||||| |||||||||||  | || |||||||||||||| | ||||||||||||||| ||||    
T  8979424 tcgggataaaattcttctggatttttccaagtattaggatctctttgaatagcccagacgtttacatacaatattgtttgggctggaatattgtagccat 8979325  T
Q  1252 ttatagtgcaattttcacgtgattctctagacaggagcaatggggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaatt 1351  Q
    | ||| ||||  |||| | ||||||||| |  |  |||| ||| |||||||| | ||||||||| |||||||| |||||||||||||||||  |  ||||    
T  8979324 tgataatgcatgtttcccttgattctcttggtacaagcagtggagctggtaggtacaatcttaatgtctcttttatcactgccttcaaatatagagaatt 8979225  T
Q  1352 ttgaatatcatcttcatctaaaaattctttttcacgtcccaagtttctaatttc 1405  Q
    |||||||||||||||||||||||| ||||||| || ||||||||| ||||||||    
T  8979224 ttgaatatcatcttcatctaaaaaatcttttttacctcccaagttcctaatttc 8979171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 264; E-Value: 1e-146
Query Start/End: Original strand, 863 - 1406
Target Start/End: Complemental strand, 8955376 - 8954834
Alignment:
Q  863 gaaaccaacatagtcacgataaaggtcatgcatctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatt 962  Q
    |||||||||||||| |  |||||||  ||| |||||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| ||||    
T  8955376 gaaaccaacatagttaatataaaggg-atgtatctacttagggatcttggctataaggtaaagaggattcttcttgtgttgagtgatccctggcagcatt 8955278  T
Q  963 tcagtatcaatatcttcctttaccaacccatctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccatag 1062  Q
    || ||||||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||| || || | ||||||||    
T  8955277 tctgtatcaacatcttcttttaccaacccatctggtaagctccaatcaaatgaatagagaagatttgcaaggataagttccaacgaggcgattgccatag 8955178  T
Q  1063 gcatacctgggcaaattctacgaccagctccaaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaa 1162  Q
    | ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  8955177 gtataccggggcaaattctacgaccagctccaaagggtattagttcaaagtcttgtccaataaaatttatagaactttctaagaatctctcaggataaaa 8955078  T
Q  1163 ttcttctgcgttttcccaaacattatggtctctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaa 1262  Q
    |||||||| ||||  ||||| ||   | ||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||| |||| || |||    
T  8955077 ttcttctgggtttatccaaatatctggatctctctgaatagcccaagcatttacatataatattgtctttgcaggaatgttgtatccacttatggtacaa 8954978  T
Q  1263 ttttcacgtgattctctagacaggagcaatggggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcat 1362  Q
    ||||||   ||||| || | ||  || | |||||||||||| || |||||||  ||||||||||  |  ||||||||||||||  |||||||||||||||    
T  8954977 ttttcaatagattcccttggcacaagtagtggggctggtaggtgtaatcttagtgtctctttaactatagccttcaaataaggacaattttgaatatcat 8954878  T
Q  1363 cttcatctaaaaattctttttcacgtcccaagtttctaatttct 1406  Q
    |||||| |||||| ||||||| |  |||||| ||||| ||||||    
T  8954877 cttcatataaaaaatcttttttaactcccaaatttcttatttct 8954834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 239; E-Value: 1e-131
Query Start/End: Original strand, 22 - 403
Target Start/End: Original strand, 8998131 - 8998523
Alignment:
Q  22 taaaattaaatggagaataagaaaa-gagagatggttagagtttgacttgaagaaagagagaaagtgaacaagaattcagcgatcgagcaagtagcacga 120  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||  |||    
T  8998131 taaaattaaatggagaataagaaaaagagagatggctggagtttgactttaagaaagagagaaagtgaacaagaattcagcaatcgtgcaagtagtgcga 8998230  T
Q  121 caaaagttatcgtgctgcaaagtattttccatctaagtatgtatgtgcatgtcttgaggttgagagtcatggcatcacacgtactagatctaaccccaaa 220  Q
    |||||||| |||||| |||||||||||||||||||||||||||    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8998231 caaaagttgtcgtgccgcaaagtattttccatctaagtatgta----catgtcttgaggttcagagtcatggcatcacacgtactagatctaaccccaaa 8998326  T
Q  221 catcaaaccttttgtttatgttttttgtgaaggagtctagggttagaattcaca-ttttttaaggtaaataagttgggtgtccgaggtttgaaccatg-g 318  Q
    ||||||||||||||||||||||||| |||||| || |||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||      
T  8998327 catcaaaccttttgtttatgtttttggtgaagtagcctagtgttagaattcacatttttttaaggtgaataagttgggtgtccgaggtttgaaccatgac 8998426  T
Q  319 ccctatatataac------------ctgtatatccgtgccaacagagttatgctcataggaaaacatcaaactttttgtttaacatttgaatttaat 403  Q
    ||||||||| |||             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8998427 ccctatataaaacttgtatataacaatgtatatccgtgccaacagagttatgctcataagaaaacatcaaactttttgtttaacatttgaatttaat 8998523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 896 - 1383
Target Start/End: Original strand, 8900342 - 8900829
Alignment:
Q  896 ctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttcctttaccaacccatct 995  Q
    ||||||||| ||||||||  ||||||||||   ||||||||||||||||||||  |||||| || |||||||||||||||||||||||||||  ||||||    
T  8900342 ctacataggaatcttggctgcaaggcaaagctcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttaccataccatct 8900441  T
Q  996 ggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagctccaa 1095  Q
    ||||||  ||||||||| || || |||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  8900442 ggtaattcccaatcaaaggagtatagaagatttgcaaggataacttccaatgatgcaactgccatagacatacctgggcaaattctacgaccggctccaa 8900541  T
Q  1096 agggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctct 1195  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||   ||||| |    
T  8900542 agggaattagttcaaaatcttgtccataaaaatttatagaactttctaaaaatctttcaggataaaactcttctgggtttttccaaacatctgggtctgt 8900641  T
Q  1196 ctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggg 1295  Q
     ||||||||||||||||||||| |||  || | ||| || ||||| | ||| ||| ||||| |||| ||||| | || |||||| | ||  |||||||||    
T  8900642 atgaatagcccaagcattcacaaacacaatcgcctttgcaggaatttggtagccacttataatgcacttttcccttgtttctcttggcacaagcaatggg 8900741  T
Q  1296 gctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattcttttt 1383  Q
     ||||||| | |||||| || |||||||| |||||||||||||| || |  |||||||| |||||||||||||||| |||||||||||    
T  8900742 cctggtaggtacaatctcaatgtctcttttatcactgccttcaagtaggagaaattttgtatatcatcttcatctataaattcttttt 8900829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 217; E-Value: 1e-118
Query Start/End: Original strand, 894 - 1406
Target Start/End: Original strand, 8966018 - 8966530
Alignment:
Q  894 atctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttcctttaccaacccat 993  Q
    ||||||||||  ||||||||||| || || ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||    
T  8966018 atctacatagtaatcttggcaaccagacagagaggattcttcttgtgttgagtgatcccaggcaacgtttcagtatcaatatcttcctttaccaatccat 8966117  T
Q  994 ctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagctcc 1093  Q
     ||||||  |||||||||| ||||| ||||||||||||||||| ||||| | |||||||||| ||||||  |||||||| |||||||||||||| |||||    
T  8966118 gtggtaacttccaatcaaaagaataaagaagattagcaaggatcagttctactgatgcaactcccatagatatacctggacaaattctacgacctgctcc 8966217  T
Q  1094 aaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtct 1193  Q
    ||| || || | ||||||||||||||||  ||||||  | |||| ||| |||||||| || |||||||| |||||||  |||| ||||  | |  |||||    
T  8966218 aaacggaataaattcaaaatcttgtccaagaaaattcgtcgaacattccaagaatctctcgggataaaactcttctggatttttccaattacttgggtct 8966317  T
Q  1194 ctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatg 1293  Q
    || ||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||| ||||| |||| ||||| | ||||||||| |  |  || | ||    
T  8966318 ctttgaatagcccaagcattcacatacactattgtgttggctggaatcttgtaaccacttataatgcacttttctcttgattctcttggaacaagtagtg 8966417  T
Q  1294 gggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattctttttcacgtcccaa 1393  Q
    |||  ||||| |||||||| ||||||||||| ||||||||||| ||||| || |||||||||||||||| ||| ||||  |||||||||| || ||||||    
T  8966418 gggtaggtaggtgcaatctcaacgtctcttttatcactgcctttaaatatgggaaattttgaatatcattttcgtctatgaattcttttttacttcccaa 8966517  T
Q  1394 gtttctaatttct 1406  Q
    |||||||||||||    
T  8966518 gtttctaatttct 8966530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 896 - 1383
Target Start/End: Original strand, 8914247 - 8914734
Alignment:
Q  896 ctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttcctttaccaacccatct 995  Q
    ||||||||| ||||||||  ||||||||||   ||||||||||||||||||||  |||||| || |||||||||||||||||||||||| ||  ||||||    
T  8914247 ctacataggaatcttggctgcaaggcaaagttcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttatcaggccatct 8914346  T
Q  996 ggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagctccaa 1095  Q
    ||||||  ||||||||| ||||| |||||||| | |||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  8914347 ggtaattcccaatcaaaggaatatagaagattggaaaggataagttcgagtgatgcaactgccatagacatacctggacaaattctacgaccggctccaa 8914446  T
Q  1096 agggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctct 1195  Q
    | || |||||||||||||||||||||  |||||||| |||||||||||| ||||| || |||||||||||||||| ||||| |||||||||   |||| |    
T  8914447 aaggaattagttcaaaatcttgtccatgaaaatttaaagaactttctaaaaatctctctggataaaattcttctgggtttttccaaacatttgagtctgt 8914546  T
Q  1196 ctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggg 1295  Q
     ||||||||||||||||||||| ||| ||| | ||| || ||||| | | | |||||||||||||| ||||||  || |||||| | |   |||||||||    
T  8914547 atgaatagcccaagcattcacaaacactatcgcctttgcgggaatttggaagccatttatagtgcatttttcagttgtttctcttggcgcaagcaatggg 8914646  T
Q  1296 gctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattcttttt 1383  Q
    ||||| || | |||||| || |||||||| ||||||||||| || || |  |||||| | |||||||||||||||| |||||||||||    
T  8914647 gctggcaggtacaatctcaatgtctcttttatcactgcctttaagtaggacaaatttcgtatatcatcttcatctataaattcttttt 8914734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 894 - 1342
Target Start/End: Original strand, 8929167 - 8929615
Alignment:
Q  894 atctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttcctttaccaacccat 993  Q
    |||||||||||||  ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8929167 atctacatagggactttggctacaaggcagagatgattcttcttgtgttgagtgatccctggcaacatttctgtatcaatatcttcctttaccaacccat 8929266  T
Q  994 ctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagctcc 1093  Q
     |||||||  ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||  |||||||||||||||||||| || |||||    
T  8929267 gtggtaattcccaatcaaatgaatagagaagattagcaagggtaagttccaacgatgcaactgcaacagaaatacctgggcaaattctacggcctgctcc 8929366  T
Q  1094 aaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtct 1193  Q
    ||| || |||| ||||||||| ||||||  ||||||||||||||| ||||||||||| ||||||||||| ||||| |  | || |||||  | |  ||||    
T  8929367 aaacggaattaattcaaaatcatgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaatttcagagtct 8929466  T
Q  1194 ctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatg 1293  Q
    || ||||||| ||||||||||||||| | |||||| || || ||||||| ||| |||  || | |||| ||||| | || |||||| | ||  |||||||    
T  8929467 ctatgaatagaccaagcattcacatatactattgtttttgcaggaatatggtagccacctacaatgcacttttcccttgtttctcttggcaaaagcaatg 8929566  T
Q  1294 gggctggtagatgcaatcttaacgtctctttaatcactgccttcaaata 1342  Q
    | |||||||| | |||||| || |||||||| ||||| |||||||||||    
T  8929567 gagctggtaggtacaatctcaatgtctcttttatcaccgccttcaaata 8929615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 133; E-Value: 2e-68
Query Start/End: Original strand, 345 - 532
Target Start/End: Original strand, 8998562 - 8998752
Alignment:
Q  345 ccaacagagttatgctcataggaaaacatcaaactttttgtttaacatttgaatttaatttaaaataaattaacataaaaatacgatatgtatctgattg 444  Q
    |||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  8998562 ccaacaaagttatgctcatagggacacatcaaaccttttgtttaacatttgaatttaatttaaaataaattaatataaaaatatgatatgtatttgattg 8998661  T
Q  445 attggatgaagagtacatacacaattaaactacatgaataccatt---ttaacctttaaaatagcaactaaatgaaaatccaaaccataaa 532  Q
    ||| |||||||||||||||||||||||||||| |||||||| |||   |||||||||||||||||||||||| ||||||||||||||||||    
T  8998662 atttgatgaagagtacatacacaattaaactagatgaatacgattttattaacctttaaaatagcaactaaacgaaaatccaaaccataaa 8998752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 530 - 801
Target Start/End: Original strand, 25275647 - 25275918
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa--gtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    ||||| |||||||  ||||||||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||| | |||||||||||| ||||||    
T  25275647 aaaatcaaagactcattaacatctacaaattaaaattgttttttacgtgtctttatatttaaaatgtatggtagaaatcattcaaaatttcatatcaaat 25275746  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgat-caatctattattttaagaaagaga 726  Q
    |||| ||  |||||||||||||||||||||| |  | ||||| |||||||||||||||||||||  ||||  |||  ||| |||||||||||| | || |    
T  25275747 gcatttacacatttgattttataaaattcattagaggaactc-tttttatggtataaatttccatttaat-agatgtaatttattattttaag-aggaaa 25275843  T
Q  727 caaacattaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgcccccaatctactata 801  Q
    | | ||||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||||| ||||    
T  25275844 cgatcattaaaatatcaaagacttaacaaatataactaaaacagtagtggagacagttgcccccaatctaatata 25275918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 8997991 - 8998108
Alignment:
Q  11 taaattagtattaaaattaaatggagaataagaaaagagagatggttagagtttgacttgaagaaagagagaaagtgaacaagaattcagcgatcgagca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  8997991 taaattagtattaaaattaaatggagaataagaaaagagagatggttagagtttgacttaaagaaagagagaaagtgaacaagaattcagcgatcgtgca 8998090  T
Q  111 agtagcacgacaaaagtt 128  Q
    |||||   ||||||||||    
T  8998091 agtagtgtgacaaaagtt 8998108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 87; E-Value: 5e-41
Query Start/End: Original strand, 530 - 740
Target Start/End: Original strand, 36692253 - 36692465
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatattt--aaagtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    ||||||||||| |  | |||||| |||||||||||||||||||||||| |||||||||||  |||||||||||||||||| | ||||||||| |||||||    
T  36692253 aaaattaaagattcatcaacatcaacaaattaaaattgttctttacgtgtctttatatttaaaaagtatggtagaaattatttaaaatttcaactcaaat 36692352  T
Q  628 gca-tgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagaga 726  Q
    | | | ||  |||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||  |||||    |||||||||||||||||| || ||    
T  36692353 gaattttacacatttgattttataaaattcatgagctaaactatttttgatggtataaatttccatttaatggaggcaatctattattttaagatag-ga 36692451  T
Q  727 caaacattaaaata 740  Q
    ||| ||||||||||    
T  36692452 caatcattaaaata 36692465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 82; E-Value: 5e-38
Query Start/End: Original strand, 530 - 688
Target Start/End: Complemental strand, 8111835 - 8111676
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa--gtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||| | |||||||||||||||||||    
T  8111835 aaaattaaagact-cataacatctacaaattaaaattgttctttatgtatctttatatttaaaaagtatggtagaaatcattcaaaatttcatctcaaat 8111737  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaattt 688  Q
    |||| ||   |||| || |||||||||| || |  |||||| |||||||||||||||||||    
T  8111736 gcatttacagatttcatcttataaaatttataagagaaactattttttatggtataaattt 8111676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 530 - 717
Target Start/End: Original strand, 53218821 - 53219009
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa--gtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    |||||||||||||  |||| |||||||||||||||||||  ||||| | || |||| ||||||  |||||||| |||| | | |||||||||||||||||    
T  53218821 aaaattaaagactcgttaatatctacaaattaaaattgtcatttacatgtcattatgtttaaaaagtatggtaaaaatcatttaaaatttcatctcaaat 53218920  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattatttta 717  Q
    |||| ||  ||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||  ||||| |  |||||||||||||||    
T  53218921 gcatttacacatttgattttataaaattcatgaaagaaactc-tttttatagtataaatttccatttaatgggggcaatctattatttta 53219009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 65; E-Value: 7e-28
Query Start/End: Original strand, 530 - 619
Target Start/End: Complemental strand, 9014482 - 9014391
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatattt--aaagtatggtagaaattaatcaaaatttca 619  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||  |||||||| ||||||||| |||||||||||    
T  9014482 aaaattaaagacttcttaacatctacatattaaaattgttctttacgtgtctttatatttaaaaagtatgatagaaattattcaaaatttca 9014391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 547 - 674
Target Start/End: Complemental strand, 48336876 - 48336747
Alignment:
Q  547 aacatctacaaattaaaattgttctttacgtatctttatatttaaa--gtatggtagaaattaatcaaaatttcatctcaaatgcatgtatgcatttgat 644  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||  |||||||| |||| | | ||||||||||||||||||||| ||  ||||||||    
T  48336876 aacatctacaaattaaaattattatttacgtgtctttatatttaaaaagtatggtaaaaatcatttaaaatttcatctcaaatgcatttacacatttgat 48336777  T
Q  645 tttataaaattcatgaacgaaactcttttt 674  Q
     || |||||||||||||  |||||||||||    
T  48336776 gttgtaaaattcatgaaaaaaactcttttt 48336747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 534 - 801
Target Start/End: Original strand, 52678760 - 52679028
Alignment:
Q  534 ttaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatattt--aaagtatggta-gaaattaatcaaaatttcatctcaaatgca 630  Q
    ||||||||  |||| |||||||||||| | |||||||||| ||| |||||||||||  ||||||| ||| || || ||||||||||||||||||||||      
T  52678760 ttaaagacaccttagcatctacaaattgagattgttcttttcgtgtctttatatttaaaaagtattgtaggatatcaatcaaaatttcatctcaaatgtg 52678859  T
Q  631 tgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagacaaa 730  Q
      ||  ||||||||||| ||||| || |||  |||||   ||||| || ||||||||| ||   |||  |  ||||||||||||||||| | | ||| |     
T  52678860 cttacacatttgattttgtaaaactcgtgagagaaac---tttttctgatataaattttcattcaataaggacaatctattattttaag-aggggactat 52678955  T
Q  731 cattaaaatatcaaaa---acttaacaaatataaccataacagtagtggggacagttgcccccaatctactata 801  Q
     |||||||||||||||   |||||||||||||||| | ||||||||| | ||||||||||||||||||||||||    
T  52678956 gattaaaatatcaaaaagtacttaacaaatataacaaaaacagtagt-gagacagttgcccccaatctactata 52679028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 530 - 762
Target Start/End: Complemental strand, 10016171 - 10015938
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaagtat--ggtagaaattaatcaaaatttcatctcaaat 627  Q
    |||||||||| ||  | ||||||||||||||||||||||| |||| || | || |||||||||  ||  |||||||||||  |||||||| |||||||||    
T  10016171 aaaattaaaggctcatcaacatctacaaattaaaattgttttttatgtgttttaatatttaaaaaatttggtagaaattatccaaaattttatctcaaat 10016072  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagac 727  Q
    | || ||  |||||  |||||||||||| | || ||||||||||| |||| |||||||||   |  ||||| || |||||||||| |||||||  ||| |    
T  10016071 gtatttacacatttagttttataaaattaacgagcgaaactctttcttatagtataaattgttatttaatgggagcaatctattagtttaagagggag-c 10015973  T
Q  728 aaacattaaaatatcaaaaacttaacaaatataac 762  Q
     | ||||||||| ||||||  |||| |||||||||    
T  10015972 catcattaaaatttcaaaattttaataaatataac 10015938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 670 - 793
Target Start/End: Complemental strand, 23605359 - 23605237
Alignment:
Q  670 ttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagacaaacattaaaatatcaaaaacttaacaaatataaccataaca 769  Q
    ||||||||||||||||||||||  ||||  |  ||||||||||||||||||  | | ||| ||||||||||||||| ||||||||||||||||   || |    
T  23605359 ttttttatggtataaatttccatttaattggggcaatctattattttaagaggggg-caatcattaaaatatcaaagacttaacaaatataactggaata 23605261  T
Q  770 gtagtggggacagttgcccccaat 793  Q
     | |||||| ||||||||||||||    
T  23605260 ttggtgggggcagttgcccccaat 23605237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000009
Query Start/End: Original strand, 530 - 592
Target Start/End: Original strand, 11523680 - 11523742
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    ||||||||||| | ||||||| ||||||||||||||| |||||||||| ||||||||||||||    
T  11523680 aaaattaaagattccttaacacctacaaattaaaattattctttacgtgtctttatatttaaa 11523742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 11697439 - 11697393
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaacataaaaata 427  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  11697439 tttgtttaacatttgaatttattttaaaataaattaatataaaaata 11697393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 530 - 592
Target Start/End: Original strand, 46467299 - 46467361
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    |||||| ||||||  | ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  46467299 aaaattgaagactcgtcaacatctacaagttaaaattgttctttacgtgtctttatatttaaa 46467361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 733 - 794
Target Start/End: Original strand, 42576336 - 42576397
Alignment:
Q  733 ttaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgcccccaatc 794  Q
    ||||||||||||| | ||||| |||||||  | || ||||||||||||||||||||||||||    
T  42576336 ttaaaatatcaaataattaacgaatataatgagaatagtagtggggacagttgcccccaatc 42576397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Complemental strand, 51205713 - 51205668
Alignment:
Q  382 ttgtttaacatttgaatttaatttaaaataaattaacataaaaata 427  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||    
T  51205713 ttgtttaatatttgaatttattttaaaataaattaatataaaaata 51205668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 381 - 424
Target Start/End: Original strand, 37937138 - 37937181
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaacataaaa 424  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||    
T  37937138 tttgttttacatttgaatttattttaaaataaattaatataaaa 37937181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 530 - 592
Target Start/End: Original strand, 42576079 - 42576141
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    ||||| |||| ||| |||||||||| | |||||||||||| ||||||| | ||||||||||||    
T  42576079 aaaatgaaagtctttttaacatctaaacattaaaattgttttttacgtgtatttatatttaaa 42576141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 548 - 585
Target Start/End: Original strand, 20956403 - 20956440
Alignment:
Q  548 acatctacaaattaaaattgttctttacgtatctttat 585  Q
    ||||||||||||||||||||||||||| || |||||||    
T  20956403 acatctacaaattaaaattgttctttatgtgtctttat 20956440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 530 - 587
Target Start/End: Complemental strand, 37149021 - 37148964
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatat 587  Q
    ||||| ||||| | |||||| ||||||||||||||||||||||||  | |||||||||    
T  37149021 aaaatgaaagaatccttaacttctacaaattaaaattgttctttatatgtctttatat 37148964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 896 - 1383
Target Start/End: Original strand, 20073801 - 20074288
Alignment:
Q  896 ctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttcctttaccaacccatct 995  Q
    ||||||||| ||||||||  ||||||||||   |||||| ||||| |||||||  ||||||||| ||||||||||||||||||||||||| |  ||||||    
T  20073801 ctacataggaatcttggctgcaaggcaaagctcattctttttgtgctgagtgagtcctggcaacctttcagtatcaatatcttcctttactagaccatct 20073900  T
Q  996 ggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagctccaa 1095  Q
    ||||||  ||||||||| ||||| |||||||| |||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  20073901 ggtaattcccaatcaaaggaatatagaagatttgcaaggataagttcgagtgatgcaactgccatagacatacctggacaaattctacgaccggctccaa 20074000  T
Q  1096 agggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctct 1195  Q
    |||| ||||||||||||||||||||   ||||||||| ||||||||||| ||||| |||||||||||||||||||  |||| |||||||||| ||||| |    
T  20074001 agggaattagttcaaaatcttgtccgtgaaaatttatcgaactttctaaaaatctctcaggataaaattcttctggatttttccaaacattagggtctgt 20074100  T
Q  1196 ctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagcaatggg 1295  Q
     ||||||||||||||||||||| ||| ||  | ||| || ||||| | ||| |||  ||||||||| ||||| | || |||||| | ||  |||||||||    
T  20074101 atgaatagcccaagcattcacaaacactaccgcctttgccggaatttggtagccacctatagtgcacttttcccttgtttctcttggcacaagcaatggg 20074200  T
Q  1296 gctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattcttttt 1383  Q
    ||||| |  | |||||| |  |||||||| |||||||||||||| || |  |||||||| |||||||||||||||| |||||||||||    
T  20074201 gctggcaagtacaatctcagtgtctcttttatcactgccttcaagtaggagaaattttgtatatcatcttcatctataaattcttttt 20074288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 4e-97
Query Start/End: Original strand, 891 - 1383
Target Start/End: Original strand, 9400034 - 9400526
Alignment:
Q  891 tgcatctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttcctttaccaacc 990  Q
    ||||||||| | |||| |||||||| |||||||||| | ||||||||||||||||  |||||||||||| |||||  ||||| ||||||||| |||||||    
T  9400034 tgcatctacgttgggaccttggcaaaaaggcaaagatggttcttcttgtgttgagcaatccctggcaacctttcaaaatcaacatcttccttaaccaacc 9400133  T
Q  991 catctggtaatatccaatcaaatgaatagagaagattagcaaggataagttccaatgatgcaactgccataggcatacctgggcaaattctacgaccagc 1090  Q
    ||| ||| |||  ||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||  || ||||| |||||||| || ||||     
T  9400134 catgtggcaattcccaatcaaaggaatagaggatattggcaaggataagttccaatgatgcaactgccatagaaatgcctggacaaattcttcgtccaga 9400233  T
Q  1091 tccaaagggtattagttcaaaatcttgtccagtaaaatttatagaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatgg 1190  Q
    ||||||||| || | |||||| |||||||||  ||||||||||||||||||||||||||| || |||||||| |||||||  | || ||||||||||  |    
T  9400234 tccaaagggaataaattcaaagtcttgtccaagaaaatttatagaactttctaagaatctctctggataaaactcttctggatctttccaaacattagag 9400333  T
Q  1191 tctctctgaatagcccaagcattcacatacaatattgtcttggctggaatattgtatccatttatagtgcaattttcacgtgattctctagacaggagca 1290  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||||| | ||| |||  |||||||||  ||||   ||| || || | ||| ||||    
T  9400334 tctctatgaatagcccaagcattcacatacactattgtctttgctggaatctggtaaccacctatagtgcacatttccattgactcccttggcagtagca 9400433  T
Q  1291 atggggctggtagatgcaatcttaacgtctctttaatcactgccttcaaataaggtaaattttgaatatcatcttcatctaaaaattcttttt 1383  Q
    ||||   ||||||    ||||| || |||||||| || ||||||||||| || |  |||||||| |||||||||||||||||||| |||||||    
T  9400434 atggatttggtaggaataatctcaatgtctcttttatgactgccttcaagtaggagaaattttgtatatcatcttcatctaaaaagtcttttt 9400526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 6e-50
Query Start/End: Original strand, 530 - 791
Target Start/End: Original strand, 36417280 - 36417536
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaag--tatggtagaaattaatcaaaatttcatctcaaat 627  Q
    |||||||||||||  | ||||||||||||||||||||||| ||||||| |||||||||| |||   |||||||||||||||     ||||||||||||||    
T  36417280 aaaattaaagactcgtcaacatctacaaattaaaattgtt-tttacgtgtctttatattcaaaaaatatggtagaaattaa-----atttcatctcaaat 36417373  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtga-tcaatctattattttaagaaagaga 726  Q
    |||| || ||||| |||||||| |||||||||||| ||||| |||||||||||||||||||  |  |||| |||  |||||||||||||||||| ||||     
T  36417374 gcatttacgcattcgattttatgaaattcatgaacaaaacttttttttatggtataaattttaatttaat-tgaggcaatctattattttaagagagag- 36417471  T
Q  727 caaacattaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgccccca 791  Q
    ||| ||||||||||| ||||| |||||||||||||||| || |||||||||| ||||| ||||||    
T  36417472 caaccattaaaatataaaaaatttaacaaatataaccagaagagtagtgggggcagtttccccca 36417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 8e-46
Query Start/End: Original strand, 547 - 813
Target Start/End: Original strand, 6439167 - 6439433
Alignment:
Q  547 aacatctacaaattaaaattgttctttacgtatctttatatttaaag--tatggtagaaattaatcaaaatttcatctcaaatgcatgtatgcatttgat 644  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||||   |||||||||||||| |||||||||||||| |||||||| || | ||| |||    
T  6439167 aacatctataaattaaaattgttttttacgtgtctttatatttaaaaaatatggtagaaattattcaaaatttcatctaaaatgcatttacgtattcgat 6439266  T
Q  645 tttataaaattcatgaacgaaactcttttttatggtataaatttccacataa-tgtgatcaatctattattttaagaaagagacaaacattaaaatatca 743  Q
    |||||||||||||||| | |||| |||||||||| ||||||||||||  ||| || || ||||||||||||||| ||| | ||||| |||||||| ||||    
T  6439267 tttataaaattcatgagc-aaacacttttttatgatataaatttccatttaactgaga-caatctattattttaggaatg-gacaatcattaaaaaatca 6439363  T
Q  744 aaaacttaacaaatataaccataacagtagtggggacagttgcccccaatctactatacatggatccgtg 813  Q
    || ||||||||||||||| |  || | ||||| | ||||||||||  |||||| | ||| ||||||||||    
T  6439364 aagacttaacaaatataatcggaagaatagtgagaacagttgcccataatctagtgtacctggatccgtg 6439433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 561 - 787
Target Start/End: Original strand, 31766343 - 31766573
Alignment:
Q  561 aaaattgttctttacgtatctttatatttaaag--tatggtagaaattaatcaaaatttcatctcaaatgcatgtatgcatttgattttataaaattcat 658  Q
    ||||||||||||||||||||||||| ||||||   |||||||||||||| | ||||||||||||||||| ||| ||| ||||||||||||||||||||||    
T  31766343 aaaattgttctttacgtatctttatgtttaaaaaatatggtagaaattatttaaaatttcatctcaaatacatttatacatttgattttataaaattcat 31766442  T
Q  659 gaacgaa---actcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagacaaacattaaaatatcaaaaacttaacaa 755  Q
     | ||||     | ||||||||||||||||||| ||  |||||    ||||||||||||||||| | | ||||| ||||||||| ||||| | |||||||    
T  31766443 aagcgaatttttttttttttatggtataaattttcatttaatggagacaatctattattttaag-aggggacaatcattaaaatctcaaacatttaacaa 31766541  T
Q  756 atataaccataacagtagtggggacagttgcc 787  Q
    ||||||||  || |||||||| ||| ||||||    
T  31766542 atataaccgaaatagtagtggagaccgttgcc 31766573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 547 - 689
Target Start/End: Original strand, 15679038 - 15679182
Alignment:
Q  547 aacatctacaaattaaaattgttctttacgtatctttatatttaaag--tatggtagaaattaatcaaaatttcatctcaaatgcatgtatgcatttgat 644  Q
    |||||||  ||||||||||||||||||| || ||||||||||||||   |||||||||||||| ||||||||||||| ||||| ||| ||  ||||||||    
T  15679038 aacatctttaaattaaaattgttctttaggtgtctttatatttaaaaaatatggtagaaattattcaaaatttcatcacaaatacatttacacatttgat 15679137  T
Q  645 tttataaaattcatgaacgaaactcttttttatggtataaatttc 689  Q
    ||||||||||| |||| |||||||||||||||||||| |||||||    
T  15679138 tttataaaattaatgagcgaaactcttttttatggtaaaaatttc 15679182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 530 - 721
Target Start/End: Complemental strand, 29834998 - 29834806
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatattt--aaagtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    ||||||||||||| | |||||||||||||||||||||||||||||   ||||||||||||  ||||||||| |||||| | |||||||||||||||||||    
T  29834998 aaaattaaagact-cataacatctacaaattaaaattgttctttatacatctttatatttgaaaagtatggcagaaatcattcaaaatttcatctcaaat 29834900  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaa 721  Q
    ||||  |   | || |||||||||||||||| |  |||||| ||||||||||||||||||||||  | ||| |  |||| ||||||||||||||    
T  29834899 gcattcacataattcattttataaaattcataagagaaactattttttatggtataaatttccatttgatggggacaatttattattttaagaa 29834806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 20220193 - 20220142
Alignment:
Q  263 ttagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  20220193 ttagaattcacattttttaaggtaaataagtggggtgtccaaggttcgaacc 20220142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 530 - 592
Target Start/End: Complemental strand, 16983142 - 16983080
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    ||||||||||| || |||||| ||||||||||||||||||||||| || ||||||| ||||||    
T  16983142 aaaattaaagattttttaacacctacaaattaaaattgttctttatgtgtctttatttttaaa 16983080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 381 - 434
Target Start/End: Original strand, 11443853 - 11443906
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaacataaaaatacgatatg 434  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||| ||||||    
T  11443853 tttgtttaacatttaaatttattttaaaataaattaatataaaaatatgatatg 11443906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 3535927 - 3535980
Alignment:
Q  261 ggttagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||| |||| |||||    
T  3535927 ggttagaattcactttttttaaggtgaataagtggggtgtccggggttcgaacc 3535980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 39986671 - 39986635
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaa 417  Q
    ||||||||||||||||||||| |||||||||||||||    
T  39986671 tttgtttaacatttgaatttactttaaaataaattaa 39986635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 545 - 592
Target Start/End: Original strand, 15681235 - 15681282
Alignment:
Q  545 ttaacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    |||||||||||||||||||| | |||||||| | ||||||||||||||    
T  15681235 ttaacatctacaaattaaaaatattctttacatgtctttatatttaaa 15681282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 513976 - 513930
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaacataaaaata 427  Q
    ||||| |||||||| |||||| ||||||||||||||| |||||||||    
T  513976 tttgtgtaacatttaaatttattttaaaataaattaatataaaaata 513930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 530 - 592
Target Start/End: Original strand, 25974568 - 25974630
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    ||||| ||| |||| ||||||| |||||||||||||| || ||||| | ||||||||||||||    
T  25974568 aaaatcaaatactttttaacatatacaaattaaaattattttttacatgtctttatatttaaa 25974630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 2e-62; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-62
Query Start/End: Original strand, 530 - 814
Target Start/End: Original strand, 46981941 - 46982230
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa--gtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    ||||| |||||||  ||||||| |||||||||||||||||||||| || ||||||||||||||  ||||||||||||||| |||||||||||| ||||||    
T  46981941 aaaatcaaagactcgttaacatttacaaattaaaattgttctttatgtgtctttatatttaaaaagtatggtagaaattattcaaaatttcatttcaaat 46982040  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaac----tcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaag 723  Q
    |||| ||  |||||||||||||||||||||||| ||||||    | ||||||||||||||||||||||  ||||| |  ||||| ||||||||||  | |    
T  46982041 gcatttactcatttgattttataaaattcatgagcgaaacttttttttttttatggtataaatttccatttaatgggggcaatcaattattttaa-tagg 46982139  T
Q  724 agacaaacattaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgcccccaatctactatacatggatccgtga 814  Q
     ||||| |||||||| |||||| | |||||||||||||||  |||| |||||||| ||||||||||||||||||||  | |||||||||||    
T  46982140 ggacaatcattaaaacatcaaagatttaacaaatataaccggaacattagtgggggcagttgcccccaatctactaagcgtggatccgtga 46982230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 530 - 747
Target Start/End: Original strand, 25183525 - 25183743
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatattt--aaagtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    |||||||||||||  | ||||||||||||| ||||||||||||||||| |||||||||||  ||| |||||||||||||| |||||||||||||||||||    
T  25183525 aaaattaaagactcgtcaacatctacaaatgaaaattgttctttacgtgtctttatatttaaaaaatatggtagaaattattcaaaatttcatctcaaat 25183624  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttat-ggtataaatttccacataatgtgatcaatctattattttaagaaagaga 726  Q
    |||| ||  ||||  |||||||||||||||| ||| |||   |||||||| |||||||||||| |  |||||    |||||||||| |||||| | | |     
T  25183625 gcatttacacattgaattttataaaattcat-aactaaaactttttttatgggtataaatttctatttaatggaggcaatctattactttaag-aggggg 25183722  T
Q  727 caaacattaaaatatcaaaaa 747  Q
    ||| |||||||||||||||||    
T  25183723 caatcattaaaatatcaaaaa 25183743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 35120164 - 35120213
Alignment:
Q  385 tttaacatttgaatttaatttaaaataaattaacataaaaatacgatatg 434  Q
    |||||||||| |||||| ||||||||||||||| ||||||||| ||||||    
T  35120164 tttaacatttaaatttattttaaaataaattaatataaaaatatgatatg 35120213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 907 - 983
Target Start/End: Original strand, 3629956 - 3630032
Alignment:
Q  907 tcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttccttt 983  Q
    |||||||||||||||||||  ||||||||||||||  ||  |  |||||||||  |||||| |||||||||||||||    
T  3629956 tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt 3630032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 22919573 - 22919621
Alignment:
Q  264 tagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    |||||||||||||||  || |||||||||| ||||||||||||||||||||    
T  22919573 tagaattcacatttt--aaagtaaataagtagggtgtccgaggtttgaacc 22919621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 2e-52; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 530 - 797
Target Start/End: Complemental strand, 4204902 - 4204635
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaag---tatggtagaaattaatcaaaatttcatctcaaa 626  Q
    |||||||||||||| | |||||||||||||||||||||||||||| || ||||||||||||||    |||||||||||||| |||||||||||||  ||     
T  4204902 aaaattaaagacttgtcaacatctacaaattaaaattgttctttaagtgtctttatatttaaaaaaatatggtagaaattattcaaaatttcatc--aag 4204805  T
Q  627 tgcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagaga 726  Q
    || || ||  |||||||||||||||||||||| ||||| ||| ||||||||| ||||||||| ||  || || || ||||||||||||||||||  | |     
T  4204804 tgaatttacacatttgattttataaaattcataaacgagactattttttatgctataaattttcatttattgggagcaatctattattttaagagcgtg- 4204706  T
Q  727 caaacattaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgcccccaatctac 797  Q
    ||| ||||||| ||||||| | |||||||||||||||  || |||||| ||| ||||||||||||||||||    
T  4204705 caatcattaaattatcaaagatttaacaaatataaccgaaagagtagtaggggcagttgcccccaatctac 4204635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 5e-35
Query Start/End: Original strand, 530 - 691
Target Start/End: Complemental strand, 7220912 - 7220750
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatattta--aagtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    ||||| |||||||  | |||||||||||||||||| | |||||||||| ||||||||||||  || |||||||||||||| |||||||||||||||||||    
T  7220912 aaaatcaaagactcatcaacatctacaaattaaaagttttctttacgtgtctttatatttataaaatatggtagaaattattcaaaatttcatctcaaat 7220813  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttcca 691  Q
    |||| ||  |  |||||||||||||||| |||| | ||||||||||||||| ||||||||||||    
T  7220812 gcatttacac-gttgattttataaaattaatgagcaaaactcttttttatgatataaatttcca 7220750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 530 - 661
Target Start/End: Original strand, 4805959 - 4806092
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa--gtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    |||||||||||||  |||||||||| |||||||||||||| ||||||| ||||||||||||||  |||||||| |||| ||| |||||||||||||||||    
T  4805959 aaaattaaagactcattaacatctataaattaaaattgttatttacgtgtctttatatttaaaaagtatggtaaaaataaattaaaatttcatctcaaat 4806058  T
Q  628 gcatgtatgcatttgattttataaaattcatgaa 661  Q
    |||| ||  ||||||||||||||| |||||||||    
T  4806059 gcatttacacatttgattttataacattcatgaa 4806092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 545 - 658
Target Start/End: Complemental strand, 1151166 - 1151051
Alignment:
Q  545 ttaacatctacaaattaaaattgttctttacgtatctttatattt--aaagtatggtagaaattaatcaaaatttcatctcaaatgcatgtatgcatttg 642  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||  ||||||| ||| |||| | | ||||||| ||||||||||||| ||  ||||||    
T  1151166 ttaacatctacaaattaaaattgttatttacgtgtctttatatttaaaaagtatagtaaaaatcatttaaaattttatctcaaatgcatttacacatttg 1151067  T
Q  643 attttataaaattcat 658  Q
    |||||||| |||||||    
T  1151066 attttatagaattcat 1151051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 530 - 658
Target Start/End: Complemental strand, 13318984 - 13318854
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatattta--aagtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    ||||||||| |||  ||||||||||||||||||||||||| |||| || ||||||||||||  |||||||||| ||   | | ||||||| |||||||||    
T  13318984 aaaattaaatactcattaacatctacaaattaaaattgttatttatgtgtctttatatttaagaagtatggtaaaatccatttaaaattttatctcaaat 13318885  T
Q  628 gcatgtatgcatttgattttataaaattcat 658  Q
    |||| ||  ||||||||||||| ||||||||    
T  13318884 gcatttacacatttgattttatcaaattcat 13318854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 534 - 592
Target Start/End: Complemental strand, 23405436 - 23405378
Alignment:
Q  534 ttaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    |||||||||  || ||||||| |||||||||||||| ||||||| ||||||||||||||    
T  23405436 ttaaagactcattgacatctataaattaaaattgttatttacgtgtctttatatttaaa 23405378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 14011029 - 14011081
Alignment:
Q  261 ggttagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaac 313  Q
    ||||||||||||||||||||||| | ||||||| || ||||||||||| ||||    
T  14011029 ggttagaattcacattttttaagatgaataagtgggatgtccgaggttcgaac 14011081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 609 - 688
Target Start/End: Complemental strand, 11993080 - 11993002
Alignment:
Q  609 tcaaaatttcatctcaaatgcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaattt 688  Q
    ||||| ||||||||||||||||  ||  |||| |||||||||||||| ||||  |||||||| |||||| ||||||||||    
T  11993080 tcaaattttcatctcaaatgcagttacacattcgattttataaaattaatgatagaaactct-ttttatagtataaattt 11993002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 301
Target Start/End: Complemental strand, 36593297 - 36593258
Alignment:
Q  262 gttagaattcacattttttaaggtaaataagttgggtgtc 301  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  36593297 gttagaattcacattttttaaggtgaataagttggatgtc 36593258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 439 - 477
Target Start/End: Original strand, 6277864 - 6277902
Alignment:
Q  439 tgattgattggatgaagagtacatacacaattaaactac 477  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  6277864 tgattgattggatgaagggtacatacacaataaaactac 6277902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 9712199 - 9712245
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaacataaaaata 427  Q
    |||||||||||||| |||||| ||||||||||||||  |||||||||    
T  9712199 tttgtttaacattttaatttattttaaaataaattattataaaaata 9712245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 39208839 - 39208909
Alignment:
Q  241 ttttttgtgaaggagtctag-ggttagaattcacattttttaaggtaaataagttgggtgtccgaggtttg 310  Q
    |||||||| ||| ||||||| || |||||||||| ||||| ||||| |||||||  |||||||||||||||    
T  39208839 ttttttgtcaagtagtctagtggctagaattcacctttttaaaggtgaataagtgaggtgtccgaggtttg 39208909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 11465119 - 11465074
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttac 575  Q
    ||||| |||| ||| |||||||||||| ||||||||||||||||||    
T  11465119 aaaataaaagtctttttaacatctacacattaaaattgttctttac 11465074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 2e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 530 - 791
Target Start/End: Complemental strand, 2344351 - 2344090
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatattt--aaagtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||  |||||||||| ||||||| |||||||||||| ||||||    
T  2344351 aaaattaaagactcctcaacatctacaagttaaaattgttctttacttatctttatatttaaaaagtatggtggaaattattcaaaatttcatatcaaat 2344252  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagac 727  Q
    |||| ||  || |||||||||||||||| ||||  |||||  |||| ||  ||||||||||  |  ||||| || ||||||||||||||||| | || ||    
T  2344251 gcatttacacacttgattttataaaattaatgagtgaaaccattttataaagtataaatttatatttaatggga-caatctattattttaag-aggatac 2344154  T
Q  728 aaacattaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgccccca 791  Q
    || ||||||||||||||| ||||||||||||||||   |  |||||||||| ||||||||||||    
T  2344153 aaccattaaaatatcaaagacttaacaaatataacaggacgagtagtgggggcagttgccccca 2344090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 530 - 627
Target Start/End: Original strand, 15603137 - 15603236
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatt--taaagtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    |||||||||||||| |||| ||||| |||||||||||||| |||| || ||||||||||   ||||||||| |||||| | ||||||||| || ||||||    
T  15603137 aaaattaaagactttttaatatctagaaattaaaattgttatttatgtgtctttatattcaaaaagtatggaagaaataattcaaaattttatttcaaat 15603236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 602 - 671
Target Start/End: Original strand, 20473955 - 20474024
Alignment:
Q  602 aaattaatcaaaatttcatctcaaatgcatgtatgcatttgattttataaaattcatgaacgaaactctt 671  Q
    |||||| ||||||||||||||||||||||| |   ||||| |||||||||||||||| ||  ||||||||    
T  20473955 aaattattcaaaatttcatctcaaatgcatttgcacatttaattttataaaattcataaaaaaaactctt 20474024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 8416340 - 8416294
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaacataaaaata 427  Q
    ||||||||||||||||||||| ||||  ||||||||| |||||||||    
T  8416340 tttgtttaacatttgaatttattttattataaattaatataaaaata 8416294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 17347358 - 17347305
Alignment:
Q  261 ggttagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    |||||||||| || ||||||||||| ||||||| |||||||| ||||| |||||    
T  17347358 ggttagaatttaccttttttaaggtgaataagtggggtgtccaaggttcgaacc 17347305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 29204860 - 29204913
Alignment:
Q  261 ggttagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    ||||||||||||| ||||||||||| ||||||| |||||| ||| ||| |||||    
T  29204860 ggttagaattcactttttttaaggtgaataagtggggtgttcgaagttcgaacc 29204913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 2e-34; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 530 - 801
Target Start/End: Complemental strand, 50090280 - 50090010
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaagtatggtagaaattaatcaaaatttcatctcaaatgc 629  Q
    |||||||||||||  |||||||  | ||||||||||| || |||| || ||| ||| |  |||||| ||||||||| | ||||| |||||||||||||||    
T  50090280 aaaattaaagactcattaacattgataaattaaaattattgtttaagtgtctatatttaaaaagtacggtagaaatcattcaaattttcatctcaaatgc 50090181  T
Q  630 atgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagacaa 729  Q
    || ||  ||||||||||||||||||||||||   ||| | |||||||||||||||||||||| |||||| |  |||| |||||||||||||  || | ||    
T  50090180 atttacacatttgattttataaaattcatgagataaaatattttttatggtataaatttccatataatgggggcaatatattattttaagagggata-aa 50090082  T
Q  730 acattaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgcccccaatctactata 801  Q
      |||||||||||||| |||||||| |||  ||   || ||||||||||  ||||||| ||| |||||||||    
T  50090081 ttattaaaatatcaaatacttaacagatactacagaaatagtagtgggggtagttgcctccattctactata 50090010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 533 - 720
Target Start/End: Complemental strand, 46068710 - 46068522
Alignment:
Q  533 attaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaag--tatggtagaaattaatcaaaatttcatctcaaatgca 630  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||  ||||||| | || | | |||||||||||||| |||||    
T  46068710 attaatgacttcttaatatctacaaattaaaattgttatttacgtgtctttatatttaaagagtatggtaaatatcatttaaaatttcatctcatatgca 46068611  T
Q  631 tgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaaga 720  Q
    | ||  |||||||||||||||||||||| |  |||||||||||  |   ||||||||| ||  |||||||  ||||||||||||||||||    
T  46068610 tttacacatttgattttataaaattcataagagaaactctttta-accatataaattttcatttaatgtgggcaatctattattttaaga 46068522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 571 - 798
Target Start/End: Original strand, 23655956 - 23656180
Alignment:
Q  571 tttacgtatctttatatttaaag-tatggtagaaattaatcaaaatttcatctcaaatgcatgtatgcatttgattttataaaattcatgaacgaaactc 669  Q
    ||||||| ||||||||||||||  ||| ||| |||||| |||||||||||||   |||||||  | |||||||||||||||||||||||||   ||||||    
T  23655956 tttacgtgtctttatatttaaaaatatagtaaaaattattcaaaatttcatccagaatgcattcacgcatttgattttataaaattcatgagtaaaactc 23656055  T
Q  670 ttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagacaaacattaaaatatcaaaaacttaacaaatataaccataaca 769  Q
    |||||||| |||||||||||||  ||||| |  |||| ||||||||||| | || ||  | |||||| |||||||| | |||||||||||||||| || |    
T  23656056 ttttttattgtataaatttcca-ttaatgagggcaatatattattttaaaagag-gatgatcattaacatatcaaagatttaacaaatataacca-aaga 23656152  T
Q  770 gtagtggggacagttgcccccaatctact 798  Q
    || ||||||  |||||||||||| |||||    
T  23656153 gtcgtgggg-tagttgcccccaaactact 23656180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 530 - 607
Target Start/End: Complemental strand, 36823890 - 36823811
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatattt--aaagtatggtagaaatta 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||  ||||||||||||||||||    
T  36823890 aaaattaaagacttcttaacatctacaaattaaaattgttctttacatgtcttcatatttaaaaagtatggtagaaatta 36823811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 561 - 688
Target Start/End: Complemental strand, 28817670 - 28817542
Alignment:
Q  561 aaaattgttctttacgtatctttatatttaaag--tatggtagaaattaatcaaaatttcatctcaaatgcatgtatgcatttgattttataaaattcat 658  Q
    |||||||||||| || | ||||||||||||||   |||||||||||| |  |||||||| ||||||||| ||| ||  ||||||||||||||||||| ||    
T  28817670 aaaattgttcttcacatgtctttatatttaaaaaatatggtagaaatcatacaaaatttgatctcaaatacatttacacatttgattttataaaatttat 28817571  T
Q  659 gaacgaaactcttttttatggtataaattt 688  Q
    ||  | ||| ||||||||||||||||||||    
T  28817570 gagag-aacacttttttatggtataaattt 28817542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 646 - 759
Target Start/End: Original strand, 36794436 - 36794548
Alignment:
Q  646 ttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagacaaacattaaaatatcaaa 745  Q
    ||||||||||||||| | ||||  ||||||||| ||||||||| ||  ||||| |  ||||||||||||||||| | ||||||| |||||||||||||||    
T  36794436 ttataaaattcatgagcaaaacatttttttatgatataaattttcatttaatgggggcaatctattattttaag-aggagacaatcattaaaatatcaaa 36794534  T
Q  746 aacttaacaaatat 759  Q
     ||| |||||||||    
T  36794535 gactaaacaaatat 36794548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 553 - 617
Target Start/End: Complemental strand, 51814228 - 51814162
Alignment:
Q  553 tacaaattaaaattgttctttacgtatctttatattt--aaagtatggtagaaattaatcaaaattt 617  Q
    ||||| |||||||||||||||||||||||||||||||  ||||| |||| ||||||| |||||||||    
T  51814228 tacaagttaaaattgttctttacgtatctttatatttaaaaagtgtggtggaaattattcaaaattt 51814162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 703 - 791
Target Start/End: Complemental strand, 51814080 - 51813993
Alignment:
Q  703 caatctattattttaagaaagagacaaacattaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgccccca 791  Q
    ||||||||||||||||||  | | ||| ||||||||||||||| ||||||||||||||| |  |  ||| |||||||||||||||||||    
T  51814080 caatctattattttaagagggtg-caatcattaaaatatcaaagacttaacaaatataaacggatgagtggtggggacagttgccccca 51813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 546 - 592
Target Start/End: Complemental strand, 52318944 - 52318898
Alignment:
Q  546 taacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||||    
T  52318944 taacatctagaaattaaaattgttctttacgtgtcttaatatttaaa 52318898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 33162165 - 33162132
Alignment:
Q  261 ggttagaattcacattttttaaggtaaataagtt 294  Q
    ||||||||||||||||||||||||||||||||||    
T  33162165 ggttagaattcacattttttaaggtaaataagtt 33162132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 531 - 592
Target Start/End: Original strand, 41240353 - 41240414
Alignment:
Q  531 aaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    |||||||||| |  |||||||||||||||||||||||||  |||| | ||||||||||||||    
T  41240353 aaattaaagattcattaacatctacaaattaaaattgtttattacttgtctttatatttaaa 41240414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 703 - 796
Target Start/End: Complemental strand, 46535093 - 46535001
Alignment:
Q  703 caatctattattttaagaaagagacaaacattaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgcccccaatcta 796  Q
    ||||||||||||||||||| ||| |||  || ||||||||||| | ||| |||||||||  | || ||||||||||||| ||||| ||||||||    
T  46535093 caatctattattttaagaaggag-caataataaaaatatcaaataattagcaaatataatgagaatagtagtggggacaattgccgccaatcta 46535001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 37707636 - 37707688
Alignment:
Q  262 gttagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    |||||||||||| |||||||| ||||||||||||| |||||| |||| |||||    
T  37707636 gttagaattcaccttttttaaagtaaataagttggatgtccggggttcgaacc 37707688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 32278138 - 32278092
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaacataaaaata 427  Q
    ||||||||| ||||||||||| |||||||||||| || |||||||||    
T  32278138 tttgtttaatatttgaatttattttaaaataaatcaatataaaaata 32278092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 34430509 - 34430463
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaacataaaaata 427  Q
    |||||||||||||| |||||| ||||| ||||||||| |||||||||    
T  34430509 tttgtttaacatttaaatttattttaatataaattaatataaaaata 34430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 28951970 - 28951917
Alignment:
Q  261 ggttagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    ||||||||||||||||||| ||||| ||||||| |||||| || |||| |||||    
T  28951970 ggttagaattcacatttttcaaggtgaataagtggggtgttcggggttcgaacc 28951917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 3e-33; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 530 - 800
Target Start/End: Complemental strand, 38143934 - 38143666
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa--gtatggtagaaattaatcaaaatttcatctcaaat 627  Q
    ||||||| |||||  | ||||||||||| ||||||||||||||||| | |||||||||| |||  | ||||| ||||||| |||||||||||  ||||||    
T  38143934 aaaattagagactcgtcaacatctacaagttaaaattgttctttacatgtctttatattaaaaaagaatggtggaaattattcaaaatttcacatcaaat 38143835  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagac 727  Q
    |||| ||  ||||||||||||||||||||||| ||||||| | |||||||| |||||||||| |  ||||| |  |||| ||||||||||||| || |||    
T  38143834 gcatttacacatttgattttataaaattcatgcacgaaac-cctttttatgatataaatttctatttaatgag-gcaat-tattattttaagagag-gac 38143739  T
Q  728 aaacattaaaatatcaaaaacttaacaaatataaccataacagtagtggggacagttgcccccaatctactat 800  Q
    || ||||||||||||||||  |||| ||| |||| |  |  ||| | |||| ||||||||||||||| |||||    
T  38143738 aatcattaaaatatcaaaattttaataaacataatcggacgagtggcgggggcagttgcccccaatccactat 38143666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 594 - 755
Target Start/End: Original strand, 43804745 - 43804905
Alignment:
Q  594 tatggtagaaattaatcaaaatttcatctcaaatgcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccaca 693  Q
    |||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||  |||||||||||||||| |||||||||  |      
T  43804745 tatggtagaaattattcaaaatttcatctcaaatgcatttatacatttgattttataaaattcatgagtgaaactcttttttatgctataaatttttatt 43804844  T
Q  694 taatgtgatcaatctattattttaagaaagagacaaacattaaaatatcaaaaacttaacaa 755  Q
    |||||||  |||| ||||| |||||||  ||  ||| ||||||||||||||| | |||||||    
T  43804845 taatgtgggcaatatattagtttaagaggga-tcaatcattaaaatatcaaagatttaacaa 43804905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 7e-28
Query Start/End: Original strand, 530 - 661
Target Start/End: Complemental strand, 16870749 - 16870615
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatattt---aaagtatggtagaaattaatcaaaatttcatctcaaa 626  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||||| |||||||||||   ||||||||||| | || | | | ||||||||||||||    
T  16870749 aaaattaaagatttattaacatctacaaattaaaattgttatttacgtgtctttatatttaaaaaagtatggtaaatatcatttagaatttcatctcaaa 16870650  T
Q  627 tgcatgtatgcatttgattttataaaattcatgaa 661  Q
    ||||| ||  |||||||||||||||||||| ||||    
T  16870649 tgcatttacacatttgattttataaaattcctgaa 16870615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 590 - 669
Target Start/End: Original strand, 16216065 - 16216144
Alignment:
Q  590 aaagtatggtagaaattaatcaaaatttcatctcaaatgcatgtatgcatttgattttataaaattcatgaacgaaactc 669  Q
    ||||||||||| | || | ||||||||||||||||||||||  ||  ||||||||||||||||||||||||  |||||||    
T  16216065 aaagtatggtaaatatcattcaaaatttcatctcaaatgcaattacacatttgattttataaaattcatgacagaaactc 16216144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 530 - 592
Target Start/End: Complemental strand, 39779920 - 39779858
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    ||||||||||| |||||||||||||| ||||| |||||||||| | || ||||||| ||||||    
T  39779920 aaaattaaagatttcttaacatctactaattataattgttcttcatgtgtctttatttttaaa 39779858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 530 - 592
Target Start/End: Complemental strand, 47683270 - 47683208
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    ||||||||||| | ||||||||||||||||||||| || ||||||| ||| | ||||||||||    
T  47683270 aaaattaaagattccttaacatctacaaattaaaaatgatctttacatatttgtatatttaaa 47683208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 1576114 - 1576163
Alignment:
Q  263 ttagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaa 312  Q
    ||||||||||| ||||| ||||||||||||| ||||||||| ||||||||    
T  1576114 ttagaattcacttttttcaaggtaaataagtggggtgtccggggtttgaa 1576163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 387 - 480
Target Start/End: Original strand, 46073240 - 46073333
Alignment:
Q  387 taacatttgaatttaatttaaaataaattaacataaaaatacgatatgtatctgattgattggatgaagagtacatacacaattaaactacatg 480  Q
    ||||||||  ||||| ||||||||||||||| || |||||| ||||||    ||||||||||||||| | |||||||| |||  ||||||||||    
T  46073240 taacatttttatttattttaaaataaattaatatgaaaataggatatggcattgattgattggatgaggggtacatacccaaccaaactacatg 46073333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 381 - 489
Target Start/End: Complemental strand, 41816725 - 41816617
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaacataaaaatacgatatgtatctgattgattggatgaagagtacatacacaattaaactacatg 480  Q
    ||||||||| |||| |||||| ||||||||||||||| ||||||||  |||||     |||||||||||||||  ||||||||  |||  ||| ||||||    
T  41816725 tttgtttaatatttaaatttattttaaaataaattaatataaaaatgtgatataacattgattgattggatgattagtacatatccaaccaaaatacatg 41816626  T
Q  481 aataccatt 489  Q
    | |||||||    
T  41816625 agtaccatt 41816617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 586
Target Start/End: Original strand, 92343 - 92398
Alignment:
Q  531 aaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttata 586  Q
    |||| |||| || ||||||||||||||| |||| ||||||||||||| ||||||||    
T  92343 aaatgaaaggctccttaacatctacaaaataaatttgttctttacgtgtctttata 92398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 381 - 424
Target Start/End: Complemental strand, 516918 - 516875
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaacataaaa 424  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||    
T  516918 tttgtttaacatttgtatttattttaaaataaattaatataaaa 516875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 609 - 656
Target Start/End: Complemental strand, 39779770 - 39779723
Alignment:
Q  609 tcaaaatttcatctcaaatgcatgtatgcatttgattttataaaattc 656  Q
    ||||||||||||||||||||||| | | ||||||||||| ||||||||    
T  39779770 tcaaaatttcatctcaaatgcatttgtacatttgattttttaaaattc 39779723  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 37262097 - 37262151
Alignment:
Q  261 ggttagaattca-cattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    |||||||||||| ||||||||||||| ||||||| |||| |||| ||||||||||    
T  37262097 ggttagaattcatcattttttaaggtgaataagtggggtatccggggtttgaacc 37262151  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 37492718 - 37492672
Alignment:
Q  381 tttgtttaacatttgaatttaatttaaaataaattaacataaaaata 427  Q
    |||||||||||||| |||||| |||||||||||||||  ||||||||    
T  37492718 tttgtttaacatttaaatttattttaaaataaattaatgtaaaaata 37492672  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 43020712 - 43020662
Alignment:
Q  264 tagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    |||||||||||||||| ||||| ||| ||| |||||||||||||| |||||    
T  43020712 tagaattcacatttttcaaggtgaatgagtggggtgtccgaggttcgaacc 43020662  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 2643785 - 2643846
Alignment:
Q  241 ttttttgtgaaggagtctag-ggttagaattcacattttttaaggtaaataagttgggtgtc 301  Q
    |||||||| | | ||||||| ||||||| ||||||||||||||||| ||||||| |||||||    
T  2643785 ttttttgtcaggtagtctagtggttagagttcacattttttaaggtgaataagtggggtgtc 2643846  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 610 - 691
Target Start/End: Original strand, 3231268 - 3231348
Alignment:
Q  610 caaaatttcatctcaaatgcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttcca 691  Q
    |||||||| ||||||| ||||| | | ||||||||| | ||||||||||||  |||||||||| |||| | |||||||||||    
T  3231268 caaaattttatctcaagtgcatttgtacatttgattatgtaaaattcatgagagaaactctttgttat-gaataaatttcca 3231348  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 9769571 - 9769624
Alignment:
Q  261 ggttagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    ||||||||||||| ||||| ||||| ||||||| ||||||||| |||| |||||    
T  9769571 ggttagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaacc 9769624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 16182913 - 16182860
Alignment:
Q  261 ggttagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    |||||||||||| |||||| ||| | ||||||| ||||||||| ||||||||||    
T  16182913 ggttagaattcatatttttcaagatgaataagtggggtgtccggggtttgaacc 16182860  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 530 - 575
Target Start/End: Original strand, 43804476 - 43804521
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttac 575  Q
    |||||||||||||  | |||||||| ||||||||||||||||||||    
T  43804476 aaaattaaagactcgtcaacatctataaattaaaattgttctttac 43804521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 48260183 - 48260232
Alignment:
Q  264 tagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaac 313  Q
    |||||||||||||||| ||||| ||||||| ||||||||| |||| ||||    
T  48260183 tagaattcacatttttcaaggtgaataagtggggtgtccggggttcgaac 48260232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 63; Significance: 1e-26; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 547 - 674
Target Start/End: Complemental strand, 24398 - 24269
Alignment:
Q  547 aacatctacaaattaaaattgttctttacgtatctttatatttaaa--gtatggtagaaattaatcaaaatttcatctcaaatgcatgtatgcatttgat 644  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||  |||||||| |||| | | ||||||||||||||||||||| ||  ||||||||    
T  24398 aacatctacaaattaaaattattatttacgtgtctttatatttaaaaagtatggtaaaaatcatttaaaatttcatctcaaatgcatttacacatttgat 24299  T
Q  645 tttataaaattcatgaacgaaactcttttt 674  Q
     || |||||||||||||  |||||||||||    
T  24298 gttgtaaaattcatgaaaaaaactcttttt 24269  T

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Target: chr2 (Bit Score: 59; Significance: 3e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 551 - 801
Target Start/End: Complemental strand, 41890738 - 41890490
Alignment:
Q  551 tctacaaattaaaattgttctttacgtatctttatatttaaagtatggtagaaattaatcaaaatttcatctcaaatgcatgtatgcatttgattttata 650  Q
    ||||||||||||| ||||| || |||| ||| ||| | |||||||||||| |  | | | ||||||| ||||||||||||| ||  || |||||||||||    
T  41890738 tctacaaattaaagttgtttttcacgtgtctatatttataaagtatggtaaatgtcatttaaaattttatctcaaatgcatttacacaattgattttata 41890639  T
Q  651 aaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagacaaacattaaaatatcaaaaactt 750  Q
    ||||||||||  ||||||| |||| ||||||||||||||||  ||| |||  |||| ||||||| ||||| || | |||  |||||||||||||| | ||    
T  41890638 aaattcatgagagaaactc-ttttaatggtataaatttccatttaacgtgggcaatttattattataagagag-ggcaataattaaaatatcaaagattt 41890541  T
Q  751 aacaaatataaccataacagtagtggggacagttgcccccaatctactata 801  Q
    ||||||||  |||  || | |||||||| || ||||| |||||| ||||||    
T  41890540 aacaaataacaccgaaaaattagtgggggcatttgcctccaatccactata 41890490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 530 - 620
Target Start/End: Complemental strand, 11808943 - 11808851
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatattt--aaagtatggtagaaattaatcaaaatttcat 620  Q
    |||||||||||||  |||||| |||||||||||||||||||||| | | |||||||||||  |||||||||||||||||| ||||||||||||    
T  11808943 aaaattaaagactcattaacagctacaaattaaaattgttctttgcatgtctttatatttaaaaagtatggtagaaattattcaaaatttcat 11808851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 17896943 - 17896883
Alignment:
Q  241 ttttttgtgaaggagtctag-ggttagaattcacattttttaaggtaaataagttgggtgt 300  Q
    |||||||| ||| ||| ||| ||||||||||||||||||||||||| ||||||| ||||||    
T  17896943 ttttttgttaagtagtttagtggttagaattcacattttttaaggtgaataagtggggtgt 17896883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 637 - 688
Target Start/End: Complemental strand, 11808845 - 11808794
Alignment:
Q  637 catttgattttataaaattcatgaacgaaactcttttttatggtataaattt 688  Q
    |||||||||||| ||||||||||| | ||||||||||| || ||||||||||    
T  11808845 catttgattttacaaaattcatgagcaaaactctttttcatagtataaattt 11808794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 22014646 - 22014696
Alignment:
Q  264 tagaattcacattttttaaggtaaataagttgggtgtccgaggtttgaacc 314  Q
    |||||||||||||||| ||||||||||||| ||||||| | |||| |||||    
T  22014646 tagaattcacatttttcaaggtaaataagtggggtgtctggggttcgaacc 22014696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 25333495 - 25333421
Alignment:
Q  26 attaaatggagaataagaaa-agagagatggttagagtttgacttgaagaaagagagaaagtgaacaagaattca 99  Q
    |||||||||||||||||||| | ||||| |||| || || ||  |||||||||||||||| ||| ||||||||||    
T  25333495 attaaatggagaataagaaagaaagagagggttggaattggatatgaagaaagagagaaattgatcaagaattca 25333421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 34107399 - 34107338
Alignment:
Q  241 ttttttgtgaaggagtctag-ggttagaattcacattttttaaggtaaataagttgggtgtc 301  Q
    |||||||| ||| ||||||| || |||||||||||||||| ||||| ||||||| |||||||    
T  34107399 ttttttgtcaagtagtctagtggctagaattcacatttttcaaggtgaataagtggggtgtc 34107338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1436 (Bit Score: 56; Significance: 2e-22; HSPs: 1)
Name: scaffold1436
Description:

Target: scaffold1436; HSP #1
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 530 - 762
Target Start/End: Original strand, 120 - 353
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaag--tatggtagaaattaatcaaaatttcatctcaaat 627  Q
    |||||||||| ||  | ||||||||||||||||||||||| |||| || | || |||||||||   ||||||||||||||  |||||||| |||||||||    
T  120 aaaattaaaggctcatcaacatctacaaattaaaattgttttttatgtgttttaatatttaaaaaatatggtagaaattatccaaaatttaatctcaaat 219  T
Q  628 gcatgtatgcatttgattttataaaattcatgaacgaaactcttttttatggtataaatttccacataatgtgatcaatctattattttaagaaagagac 727  Q
    | || ||  |||||  |||||||||||| | || ||||||||||| |||| |||||||||   |  ||||| || |||||||||| |||||||  ||| |    
T  220 gtatttacacatttagttttataaaattaacgagcgaaactctttcttatagtataaattgtaatttaatgggagcaatctattagtttaagagggag-c 318  T
Q  728 aaacattaaaatatcaaaaacttaacaaatataac 762  Q
     | ||||||||| ||||||  |||| |||||||||    
T  319 catcattaaaatttcaaaattttaataaatataac 353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 33; Significance: 0.000000008; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 907 - 983
Target Start/End: Complemental strand, 16129 - 16053
Alignment:
Q  907 tcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttccttt 983  Q
    |||||||||||||||||||  ||||||||||||||  ||  |  |||||||||  |||||| |||||||||||||||    
T  16129 tcttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt 16053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 530 - 592
Target Start/End: Original strand, 19636 - 19698
Alignment:
Q  530 aaaattaaagacttcttaacatctacaaattaaaattgttctttacgtatctttatatttaaa 592  Q
    ||||||||||| |  ||||||| |||||||||||||||||| |||  | ||||||||||||||    
T  19636 aaaattaaagattcattaacatatacaaattaaaattgttcattatatgtctttatatttaaa 19698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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