View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1430_low_3 (Length: 708)
Name: NF1430_low_3
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1430_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 35447519 - 35447890
Alignment:
| Q |
1 |
aacaacacaagatgattctgagagcttatatcacagcctggtcagggacaaaaaagagacagatcaaagcatctgacaggaagtatagaaatcgataatg |
100 |
Q |
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| T |
35447519 |
aacaacacaagatgattctgagagcttatatcacagcctggtcagggacaaaaaagaaacagatcaaagcatctgacaggaagtatagaaatcgataatg |
35447618 |
T |
|
| Q |
101 |
acgacaatgatcacatgaattacaaaaaagtcatagctagtcctgaaaaataaagattgaatgacaataaagacttgtggctaagcggctcactcaaaga |
200 |
Q |
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| T |
35447619 |
acgacaatgatcgcatgaattacaaaaaagtcatagctagtcctgaaaaataaagattgaatgacaataaagacttgtggctaaggggctcactcaaaga |
35447718 |
T |
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| Q |
201 |
gaatgcattgctttcattgaaatatattttcctgttgtgaaacatacaagtattggagggaatgtatcacttgttgtaaaggagaatactttgatggata |
300 |
Q |
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| T |
35447719 |
gaatgcattgctttcattgaaatatattttcctgttgtgaaacatacaagtattggagggaatgtatcacttgttgtaaaggagaatactttgatggata |
35447818 |
T |
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| Q |
301 |
atatatataaagaaacatgacatcaaatgattagattttgagtactatactaataaagttatggaatatgga |
372 |
Q |
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| T |
35447819 |
atatatataaagtaacatgacatcaaatgattagattttgagtactatactaataaagttatggaatatgga |
35447890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 473 - 640
Target Start/End: Original strand, 35447991 - 35448158
Alignment:
| Q |
473 |
tatcccataatcatctacaccatcacacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgttcatcc |
572 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35447991 |
tatcccataatcacctacaccatcacacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgttcatcc |
35448090 |
T |
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| Q |
573 |
atgagttatggttttatgtacaacactgttctagcattttgttaaacctgcagccaagataaacaatt |
640 |
Q |
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| T |
35448091 |
atgagttatggttttatgtacaacactgttctagcattttgttaaacctgcagccaagataaacaatt |
35448158 |
T |
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