View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1430_low_33 (Length: 226)

Name: NF1430_low_33
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1430_low_33
NF1430_low_33
[»] chr1 (5 HSPs)
chr1 (10-211)||(14976393-14976594)
chr1 (10-213)||(43554608-43554811)
chr1 (12-161)||(16586877-16587026)
chr1 (137-206)||(4534475-4534544)
chr1 (137-197)||(1946984-1947044)
[»] chr7 (5 HSPs)
chr7 (10-211)||(32468767-32468968)
chr7 (63-208)||(27000052-27000197)
chr7 (126-196)||(7690741-7690811)
chr7 (78-196)||(47801308-47801426)
chr7 (95-197)||(3683133-3683235)
[»] chr2 (3 HSPs)
chr2 (10-211)||(26246249-26246450)
chr2 (10-211)||(45717393-45717594)
chr2 (14-120)||(355590-355696)
[»] chr5 (1 HSPs)
chr5 (95-205)||(29812827-29812937)
[»] scaffold0036 (1 HSPs)
scaffold0036 (57-205)||(3323-3471)
[»] chr4 (2 HSPs)
chr4 (34-206)||(17535514-17535686)
chr4 (96-195)||(25057384-25057483)
[»] chr3 (2 HSPs)
chr3 (78-197)||(644370-644488)
chr3 (78-190)||(35273364-35273476)
[»] chr8 (2 HSPs)
chr8 (142-206)||(3773690-3773754)
chr8 (18-120)||(16975110-16975212)
[»] chr6 (3 HSPs)
chr6 (85-150)||(14392932-14392997)
chr6 (34-103)||(31292781-31292850)
chr6 (146-206)||(1727737-1727797)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 14976393 - 14976594
Alignment:
Q  10 ataatactttattttggtattataattgggttggggaaacacctttgcgtaccaaatttcctcggctctttgatctggcagtgaataaggagtgtttggt 109  Q
    |||||||||| || |||||| ||| ||||||||||||||  |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  14976393 ataatactttcttctggtatgatagttgggttggggaaatgcctttgtgtaccaaatttcctcggctttttgatctggcagtgaataaggagtgttcggt 14976492  T
Q  110 gggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagtgagtgcaca 209  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14976493 gggggagatggcgacattagggtgggcggaaggtggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagggagtgcaca 14976592  T
Q  210 tt 211  Q
    ||    
T  14976593 tt 14976594  T

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Target: chr1; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 43554608 - 43554811
Alignment:
Q  10 ataatactttattttggtattataattgggttggggaaacacctttgcgtaccaaatttcctcggctctttgatctggcagtgaataaggagtgtttggt 109  Q
    ||||||||||||| |||| | |||||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  43554608 ataatactttattctggtctgataattgggttgcggaaacgcctctgtgtaccaaatttcctcggctctttgatctggcagtgaataaagagtgttcggt 43554707  T
Q  110 gggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagtgagtgcaca 209  Q
    |||||||||||||||| ||||||| |||||||||||||| |  ||||||||||||||  |||||||||| |||||||| |||||||||||  ||||||||    
T  43554708 gggggagatggcgacactagggtgagcggaagggggaagagtgtgggtgtggagacgccggctgttagcttgggaggacgacagtgttaggaagtgcaca 43554807  T
Q  210 ttat 213  Q
    ||||    
T  43554808 ttat 43554811  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 16586877 - 16587026
Alignment:
Q  12 aatactttattttggtattataattgggttggggaaacacctttgcgtaccaaatttcctcggctctttgatctggcagtgaataaggagtgtttggtgg 111  Q
    ||||||| ||||||| || |||||||||| |||||||  |||||||| |  |||||||| || || ||||||||||| || | |||||||||||  ||||    
T  16586877 aatacttcattttggcatgataattgggtaggggaaattcctttgcggattaaatttccccgcctttttgatctggctgtcagtaaggagtgttcagtgg 16586976  T
Q  112 gggagatggcgacattagggtgggcggaagggggaagggcttgggtgtgg 161  Q
     ||| |||  ||  |||||||||| ||| || |||||||  |||||||||    
T  16586977 aggatatgtggaggttagggtgggaggatggtggaagggggtgggtgtgg 16587026  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 4534475 - 4534544
Alignment:
Q  137 ggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagtgagtgc 206  Q
    |||||| |||||||||||||||||||||||  |  ||||||| ||||||||||| |||||| | ||||||    
T  4534475 ggaaggaggaagggcttgggtgtggagacgccgattgttagcttgggaggaggagagtgttcgggagtgc 4534544  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 1946984 - 1947044
Alignment:
Q  137 ggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgtt 197  Q
    |||||||||| |||| ||||||||||||||  | |||||||| ||||||||||| ||||||    
T  1946984 ggaagggggaggggcgtgggtgtggagacgccgtctgttagcttgggaggaggaaagtgtt 1947044  T

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Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 32468767 - 32468968
Alignment:
Q  10 ataatactttattttggtattataattgggttggggaaacacctttgcgtaccaaatttcctcggctctttgatctggcagtgaataaggagtgtttggt 109  Q
    |||||||||| || |||||| ||| ||||||||||||||  |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||     
T  32468767 ataatactttcttctggtatgatatttgggttggggaaatgcctttgtgtaccaaatttcctcggctttttgatctggcagtgaataaggagtgttcggc 32468866  T
Q  110 gggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagtgagtgcaca 209  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  32468867 gggggagatggcgacattagggtgggcggaaggtggaagggcttgggtgtggagacgggggttgttagcgtgggaggaggacagtgttagggagtgcaca 32468966  T
Q  210 tt 211  Q
    ||    
T  32468967 tt 32468968  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 208
Target Start/End: Original strand, 27000052 - 27000197
Alignment:
Q  63 aaatttcctcggctctttgatctggcagtgaataaggagtgtttggtgggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtgga 162  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| ||| | ||||||||||||  ||||| ||||| ||||||||||    
T  27000052 aaatttcctcggctctttgatctggctgtgaataaggagtgtttgggggaggagatgacgagactagggtgggcggtcggggggagggcatgggtgtgga 27000151  T
Q  163 gacgggggctgttagcgtgggaggaggacagtgttagtgagtgcac 208  Q
    ||||  |  ||||  | ||||||||||| ||||| || ||||||||    
T  27000152 gacgtcgcttgttgtcttgggaggaggatagtgtgagggagtgcac 27000197  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 7690811 - 7690741
Alignment:
Q  126 ttagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgt 196  Q
    ||||| ||| |||| |||||| |||| ||||||||||||||| || ||||||| ||||||||||| |||||    
T  7690811 ttaggatggtcggatgggggaggggcgtgggtgtggagacggcggttgttagcatgggaggaggagagtgt 7690741  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 47801426 - 47801308
Alignment:
Q  78 tttgatctggcagtgaataaggagtgtttggtgggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttag 177  Q
    |||||| |||||||   ||||||||| | ||||| ||||||| ||||  ||||||||  |||||| ||| |||| |||||||||||||   | |||||||    
T  47801426 tttgatttggcagtttttaaggagtgctcggtggaggagatgtcgactctagggtggatggaaggtggaggggcgtgggtgtggagacaccgtctgttag 47801327  T
Q  178 cgtgggaggaggacagtgt 196  Q
    | ||||||||||| |||||    
T  47801326 cttgggaggaggaaagtgt 47801308  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 3683235 - 3683133
Alignment:
Q  95 taaggagtgtttggtgggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagt 194  Q
    ||||||||||| ||||| ||| |||  ||  || |||||| |||||||||||| ||| |||||||| |||||  | |||||||| ||||| ||||| |||    
T  3683235 taaggagtgttcggtggaggatatgtggaggttggggtggacggaagggggaatggcgtgggtgtgaagacgccgactgttagcttgggatgaggaaagt 3683136  T
Q  195 gtt 197  Q
    |||    
T  3683135 gtt 3683133  T

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Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 26246249 - 26246450
Alignment:
Q  10 ataatactttattttggtattataattgggttggggaaacacctttgcgtaccaaatttcctcggctctttgatctggcagtgaataaggagtgtttggt 109  Q
    |||||||||| || |||||| ||| ||||||||||||||  |||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |||    
T  26246249 ataatactttcttctggtatgatagttgggttggggaaatgcctttgtgtaccaaatttcctcggctttttgatctggctgtgaataaggagtgttcggt 26246348  T
Q  110 gggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagtgagtgcaca 209  Q
    ||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26246349 gggggagatggtgactttagggtgggcggaaggtgggagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagggagtgcaca 26246448  T
Q  210 tt 211  Q
    ||    
T  26246449 tt 26246450  T

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Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 45717594 - 45717393
Alignment:
Q  10 ataatactttattttggtattataattgggttggggaaacacctttgcgtaccaaatttcctcggctctttgatctggcagtgaataaggagtgtttggt 109  Q
    |||||||||| || |||||| ||| ||||||||||||||  |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  45717594 ataatactttcttctggtatgatagttgggttggggaaatgcctttgtgtaccaaatttcctcggctttttgatctggcagtgaataaggagtgttcggt 45717495  T
Q  110 gggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagtgagtgcaca 209  Q
    ||||||||||| ||| ||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  45717494 gggggagatggagactttagggtgggcggaaggtgagagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagggaatgcaca 45717395  T
Q  210 tt 211  Q
    ||    
T  45717394 tt 45717393  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 355590 - 355696
Alignment:
Q  14 tactttattttggtattataattgggttggggaaacacctttgcgtaccaaatttcctcggctctttgatctggcagtgaataaggagtgtttggtgggg 113  Q
    |||||||||||||| | |||||||||||||||||   ||||||||    ||||||||||| || |||||  |||| || ||||| ||||||  ||||| |    
T  355590 tactttattttggtttgataattgggttggggaattgcctttgcgatttaaatttcctcgactttttgacttggctgtaaataaagagtgtacggtggcg 355689  T
Q  114 gagatgg 120  Q
    |||||||    
T  355690 gagatgg 355696  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 205
Target Start/End: Original strand, 29812827 - 29812937
Alignment:
Q  95 taaggagtgtttggtgggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagt 194  Q
    ||||||||||| ||||| ||||||| |||| |||||||||  |||||| ||| |||| ||||| ||||||||  | |||||||| ||||||||||| |||    
T  29812827 taaggagtgttcggtggaggagatgtcgactttagggtggatggaaggtggaggggcgtgggtatggagacgccgtctgttagcatgggaggaggagagt 29812926  T
Q  195 gttagtgagtg 205  Q
    || || |||||    
T  29812927 gtgagggagtg 29812937  T

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Target: scaffold0036 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 3323 - 3471
Alignment:
Q  57 cgtaccaaatttcctcggctctttgatctggcagtgaataaggagtgtttggtgggggagatggcgacattagggtgggcggaagggggaagggcttggg 156  Q
    |||| ||||||||| || |||| |||| |||| |||||||||||||||| ||||| ||| |||||||  ||||||||||  ||||| ||   ||||||||    
T  3323 cgtatcaaatttccccgactctatgatttggctgtgaataaggagtgttcggtggcggaaatggcgagcttagggtgggatgaaggaggctcggcttggg 3422  T
Q  157 tgtggagacgggggctgttagcgtgggaggaggacagtgttagtgagtg 205  Q
    | |||||||||    | ||||| ||||||||||| ||||| || |||||    
T  3423 tctggagacggcatttattagcatgggaggaggatagtgtgagggagtg 3471  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 17535686 - 17535514
Alignment:
Q  34 attgggttggggaaacacctttgcgtaccaaatttcctcggctctttgatctggcagtgaataaggagtgtttggtgggggagatggcgacattagggtg 133  Q
    ||||||||||||| || |||||||||  ||| |||||||| ||||||||| |||| || |||||||||||    |||| ||||||||  | |   |||||    
T  17535686 attgggttggggatacgcctttgcgtttcaagtttcctcgactctttgatttggcggtaaataaggagtgcacagtggaggagatggaaagagcggggtg 17535587  T
Q  134 ggcggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagtgagtgc 206  Q
    || ||| ||||||||| | |||||||||||||    | ||||||||||||| ||||| ||||| || ||||||    
T  17535586 gggggatgggggaaggacgtgggtgtggagacaaatgttgttagcgtgggatgaggaaagtgtgagggagtgc 17535514  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 25057483 - 25057384
Alignment:
Q  96 aaggagtgtttggtgggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtg 195  Q
    |||||||||| ||||| |||||||  ||  || | ||||  ||||||||||||||| ||||||||||||||  |  ||||||| ||||||||||| ||||    
T  25057483 aaggagtgttcggtggaggagatgtggagtttggagtggatggaagggggaagggcgtgggtgtggagacgccgattgttagcttgggaggaggaaagtg 25057384  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 644488 - 644370
Alignment:
Q  78 tttgatctggcagtgaataaggagtgtttggtgggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttag 177  Q
    |||||| |||| || ||||||||||||| ||||| |||||||  ||  || ||||||  |||||| |||||||| ||||||||||||||  | |||||||    
T  644488 tttgatttggcggtcaataaggagtgttcggtggaggagatgtagaggtt-gggtggatggaaggaggaagggcgtgggtgtggagacgccgactgttag 644390  T
Q  178 cgtgggaggaggacagtgtt 197  Q
    | |||||||| || ||||||    
T  644389 cttgggaggatgaaagtgtt 644370  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 35273476 - 35273364
Alignment:
Q  78 tttgatctggcagtgaataaggagtgtttggtgggggagatggcgacattagggtgggcggaagggggaagggcttgggtgtggagacgggggctgttag 177  Q
    |||||| |||| || |||||||||||    |||| ||||||||||| |   |||||||  || ||||||||| | ||||||||||||||  || ||||||    
T  35273476 tttgatttggcggtaaataaggagtgcacagtggaggagatggcgagagaggggtggggtgatgggggaaggacgtgggtgtggagacgtcggttgttag 35273377  T
Q  178 cgtgggaggagga 190  Q
    | |||||||||||    
T  35273376 cttgggaggagga 35273364  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 3773754 - 3773690
Alignment:
Q  142 ggggaagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagtgagtgc 206  Q
    |||||||||| ||||||||||||||  || ||||||| ||||||||||| ||||| || ||||||    
T  3773754 ggggaagggcgtgggtgtggagacgccggttgttagcttgggaggaggaaagtgtgagggagtgc 3773690  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 16975212 - 16975110
Alignment:
Q  18 ttattttggtattataattgggttggggaaacacctttgcgtaccaaatttcctcggctctttgatctggcagtgaataaggagtgtttggtgggggaga 117  Q
    |||||||||| | |||| |||||||| ||||  ||||||||    ||||||||||| || |||||  |||| || |||||||||||| |||||| |||||    
T  16975212 ttattttggtttgataaatgggttggagaaatgcctttgcgatttaaatttcctcgactttttgacttggctgtaaataaggagtgtatggtggcggaga 16975113  T
Q  118 tgg 120  Q
    |||    
T  16975112 tgg 16975110  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 14392997 - 14392932
Alignment:
Q  85 tggcagtgaataaggagtgtttggtgggggagatggcgacattagggtgggcggaagggggaaggg 150  Q
    |||| |||||||||||||||||||||| |||| || |||  ||||| |||||||| || |||||||    
T  14392997 tggctgtgaataaggagtgtttggtggaggagttgtcgaagttaggatgggcggatggaggaaggg 14392932  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 31292781 - 31292850
Alignment:
Q  34 attgggttggggaaacacctttgcgtaccaaatttcctcggctctttgatctggcagtgaataaggagtg 103  Q
    |||||||||||||| | ||||||||   ||| |||||||| ||||||||| ||||  |||||||||||||    
T  31292781 attgggttggggaatcgcctttgcgattcaagtttcctcgactctttgatttggctttgaataaggagtg 31292850  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 1727737 - 1727797
Alignment:
Q  146 aagggcttgggtgtggagacgggggctgttagcgtgggaggaggacagtgttagtgagtgc 206  Q
    |||||| ||||||||||||||  || ||||||| ||||||||||| ||||| || ||||||    
T  1727737 aagggcatgggtgtggagacgtaggttgttagcatgggaggaggaaagtgtgagggagtgc 1727797  T

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