View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1430_low_36 (Length: 216)
Name: NF1430_low_36
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1430_low_36 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 27668173 - 27668321
Alignment:
| Q |
42 |
taaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagataaatgatttgggtgtggagttgaaaggcgaggatcaaaaggccaagacca |
141 |
Q |
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| T |
27668173 |
taaatcaacggcttcagtattgaggttagtgatgttgacggagtcaagataaatgatttgggtgtggagttgaaaggcgaggatcaaaaggctaagacca |
27668272 |
T |
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| Q |
142 |
tttacgttgtctacgagaaagaaaatgtaaaccaacatggttaaagcaa |
190 |
Q |
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| T |
27668273 |
tttacgttgtctacgagaaagaaaatggaaaccaacatggttaaagcaa |
27668321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 27668898 - 27668773
Alignment:
| Q |
6 |
agtatgaaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagataaatgatttgggtg |
105 |
Q |
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| T |
27668898 |
agtatgaaatatgaaccataaatcaaatatggccgttaaatcaagggcttcggtattgaggttagtgatgttggaggagtcaaggtaaatggttggagtg |
27668799 |
T |
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| Q |
106 |
tggagttgaaaggcgaggatcaaaag |
131 |
Q |
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| T |
27668798 |
tggagttgaaaggtgggtatcaaaag |
27668773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 27673678 - 27673541
Alignment:
| Q |
1 |
ttggaagtatgaaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagataaatgattt |
100 |
Q |
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| T |
27673678 |
ttgggagtatgaaaaatgaacgatgaatcaaacgtggctattaagttaagggcttcggtattgaggttagttatgttgacggagtcaagataaatgcttg |
27673579 |
T |
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| Q |
101 |
gggtgtggagttgaaaggcgaggatcaaaaggccaaga |
138 |
Q |
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| T |
27673578 |
gggtgttgagttgaaaggtgggtatcaaaaggctaaga |
27673541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 9033 - 8954
Alignment:
| Q |
12 |
aaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagat |
91 |
Q |
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| T |
9033 |
aaaaataaacgataaatcaaacgtggccgttaaattaacggctttggtattaaggttggtgatgttaacggaatcaagat |
8954 |
T |
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