View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1430_low_37 (Length: 213)
Name: NF1430_low_37
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1430_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 40457921 - 40457741
Alignment:
| Q |
18 |
atagggcgtgtagggggtgttaatggtgtatattcaaatggtggaggcctagggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtg |
117 |
Q |
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| T |
40457921 |
atagggcgtgtggagggtgttaatggcgtgtattcaaatggtggaggtctagggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtg |
40457822 |
T |
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| Q |
118 |
gtgatgaagatggctgtgagagtgtaagccaagatgaatccacatgcttcttcatcatctttaaattaaagaatgtttgtg |
198 |
Q |
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| T |
40457821 |
gtgatgaagatggctgtgagagtgtaagccaagatggatccacatgcttcttcatcatctttaaattaaagaatgtttgtg |
40457741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 40280429 - 40280609
Alignment:
| Q |
18 |
atagggcgtgtagggggtgttaatggtgtatattcaaatggtggaggcctagggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtg |
117 |
Q |
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| T |
40280429 |
atagggcgtgtggagggtgttaatggcgtgtattcaaatggtggaggcctagggggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtg |
40280528 |
T |
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| Q |
118 |
gtgatgaagatggctgtgagagtgtaagccaagatgaatccacatgcttcttcatcatctttaaattaaagaatgtttgtg |
198 |
Q |
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| T |
40280529 |
gtgatgaagatggctgtgagagtgtaagccatgatggatccacatgcttcttcatcttctttaaattcaagattgtttgtg |
40280609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 40280654 - 40280781
Alignment:
| Q |
71 |
gggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtggtgatgaagatggctgtgagagtgtaagccaagatgaatccacatgcttcttc |
170 |
Q |
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| T |
40280654 |
gggtgatgatggtgtccattcagatgggaaaggcttaggaagtggtggtgatgaagatggctgtgagagtgtaagccatgatggatccacatgcttcttc |
40280753 |
T |
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| Q |
171 |
atcatctttaaattaaagaatgtttgtg |
198 |
Q |
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| T |
40280754 |
atcttctttaaattcaagattgtttgtg |
40280781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 40285424 - 40285483
Alignment:
| Q |
70 |
ggggtgatgatggtgtgtattcagatggtaaaggcttatggagtggtggtgatgaagatg |
129 |
Q |
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| T |
40285424 |
ggggtgttgatggtgtgtattcagatggtaaatgcttagggagtggtggtgatgaagatg |
40285483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 40280807 - 40280853
Alignment:
| Q |
35 |
tgttaatggtgtatattcaaatggtggaggcctagggggtgatgatg |
81 |
Q |
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| T |
40280807 |
tgttaatggtgtgtattcagatggtggaggcctaggtggcgatgatg |
40280853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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