View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1430_low_38 (Length: 211)
Name: NF1430_low_38
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1430_low_38 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 31637764 - 31637974
Alignment:
| Q |
1 |
ctgactactttcaagatgagattaatactaagcatgggggtgagcgtatagcaacaatgttgatgtacctgtaagtatgagtttagttgtcattgaatca |
100 |
Q |
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| T |
31637764 |
ctgactactttgaagatgaggttaatactaagcatgggggtgagcgtatagcaacaatgttgatgtacctgtaagtatgagtttagttgtcattgaatca |
31637863 |
T |
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| Q |
101 |
ttgtagacttcatgaatatatatgaagttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgt |
200 |
Q |
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| T |
31637864 |
ttgtagacttcatgaatatatatgaagttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgt |
31637963 |
T |
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| Q |
201 |
ttccatctgct |
211 |
Q |
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| T |
31637964 |
ttccatctgct |
31637974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 31646463 - 31646678
Alignment:
| Q |
14 |
agatgagattaatactaagcatgggggtgagcgtatagcaacaatgttgatgtacctgtaagtatgagtttagttgtcattgaatcattgtagact---- |
109 |
Q |
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| T |
31646463 |
agatgagattaatactaagaacgggggtgagcgtgtagcaacaatgttgatgtacctataagtatgacttcagtt-tcattcaatcattgttgacttcaa |
31646561 |
T |
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| Q |
110 |
----------------tcatgaa--tatatatgaagttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtg |
191 |
Q |
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| T |
31646562 |
ttgtatatattcatgatcatgaatatatatatgaagttgatattggtgtg--cactttttg-gttttgatgatacaattcaaatgttgaagaagggggtg |
31646658 |
T |
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| Q |
192 |
agacagtgtttccatctgct |
211 |
Q |
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| T |
31646659 |
agacagtgtttccatttgct |
31646678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 31652098 - 31652183
Alignment:
| Q |
120 |
atatgaagttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttcca |
205 |
Q |
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| T |
31652098 |
atatgaagttgatattggagttcactttttttgtaattcgatgatacagttcagatgtcgaagaagggggtgagacggtgtttcca |
31652183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 31630570 - 31630651
Alignment:
| Q |
127 |
gttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttccatctgc |
210 |
Q |
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| T |
31630570 |
gttgatattggtgtccac--tttttgtaaattgattatacagttcagatgttgaagaagggggtgagacagtgttcccagctgc |
31630651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 31656904 - 31656983
Alignment:
| Q |
124 |
gaagttgatattggtgtgcac--acttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtt |
201 |
Q |
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| T |
31656904 |
gaagttgatattggtgttcactttttttttgtaattcgataatacagttcggatgttgaagaagggggtgagacggtgtt |
31656983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 31630472 - 31630514
Alignment:
| Q |
34 |
atgggggtgagcgtatagcaacaatgttgatgtacctgtaagt |
76 |
Q |
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| T |
31630472 |
atggaggtcagcgtatagcaacaatgctgatgtacctgtaagt |
31630514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 31652019 - 31652057
Alignment:
| Q |
38 |
gggtgagcgtatagcaacaatgttgatgtacctgtaagt |
76 |
Q |
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| T |
31652019 |
gggtcagcgtatagcaacaatgctgatgtacctgtaagt |
31652057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 9104936 - 9104888
Alignment:
| Q |
153 |
tattttgatgatacagttcagatgttgaagaagggggtgagacagtgtt |
201 |
Q |
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| T |
9104936 |
tattttaatgatacagtacagatgttgaagaagggggtgagacagtgtt |
9104888 |
T |
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