View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1430_low_4 (Length: 693)

Name: NF1430_low_4
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1430_low_4
NF1430_low_4
[»] chr2 (1 HSPs)
chr2 (1-678)||(26413408-26414083)


Alignment Details
Target: chr2 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 1 - 678
Target Start/End: Original strand, 26413408 - 26414083
Alignment:
Q  1 ctgttgtggcttcgcggctttggcctagaacttctgcaatggctgagtcgttgtggtcgggcaatagggatgaaaagggtctgaagcgatacgcaggggc 100  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||    
T  26413408 ctgttttggattcgcggctttggcctagaacttctgcaatggctgagtcgttgtggtcaggcaatagggatgagaagggtctgaagcgatacgcagaggc 26413507  T
Q  101 aacagatagattgaatgaatggcgaagcagaatggtgagtagaggtataggagctgagcctattcagccactttggtgtgttaggaaccctggtatgtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26413508 aacagatagattgaatgaatggcgaagcagaatggtgagtagaggtataggagctgagcctattcagccactttggtgtgttaggaaccctggtatgtgc 26413607  T
Q  201 aacacagtacatgcaatctagtgtgtgtttcgagagcgtcagattcatgctgccgccagacatcaatctcaaggctacaactactagcttctctcggacc 300  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26413608 aacacagtacatgcaatctagtgt--gtttcgagagcgtcagattcatgctgccaccagacatcaatctcaaggctacaactactagcttctctcggacc 26413705  T
Q  301 attcgtccagatatttgcaccgcgtttccaaacatatttgtagttagttgagttggaacttgcattcttcttttgttaccagaatcctcctctataaaag 400  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26413706 atttgtccagatatttgcaccgcgtttccaaacatatttgtagttagttgagttggaacttgcattcttcttttgttaccagaatcctcctctataaaag 26413805  T
Q  401 gggaaaaagagctatttatatacttcattttcttttacttttaatcaggtctatagtgtccaactgttgtgcgagcctactgaaagaaaatttattgttt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26413806 gggaaaaagagctatttatatacttcattttcttttacttttaatcaggtctatagtgtccaactgttgtgcgagcctactgaaagaaaatttattgttt 26413905  T
Q  501 ggttagaagagactgtagttatcatacaatgttacaaggatttgaacatttaagttaacaaatcataatatttgatggtgttcgtgacctcgaaaatttc 600  Q
    | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26413906 gattagaagagactgtagttatcgtacaatgttacaaggatttgaacatttaagttaacaaatcataatatttgatggtgtttgtgacctcgaaaatttc 26414005  T
Q  601 ttgacttcaattgatgttgaaagttgttgtataattaaaattttaccaaatgctgctagagccgcataatgttagatc 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26414006 ttgacttcaattgatgttgaaagttgttgtataattaaaattttaccaaatgctgctagagccgcataatgttagatc 26414083  T

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