View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1430_low_7 (Length: 518)

Name: NF1430_low_7
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1430_low_7
NF1430_low_7
[»] chr3 (1 HSPs)
chr3 (11-502)||(6059502-6059993)
[»] chr2 (6 HSPs)
chr2 (40-414)||(4254013-4254378)
chr2 (40-402)||(4246906-4247259)
chr2 (41-410)||(4314109-4314469)
chr2 (351-414)||(4305548-4305611)
chr2 (453-489)||(4246819-4246855)
chr2 (453-489)||(4253938-4253974)
[»] chr5 (2 HSPs)
chr5 (41-246)||(41933615-41933820)
chr5 (351-414)||(41933456-41933519)
[»] chr7 (1 HSPs)
chr7 (122-400)||(34802266-34802535)


Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 11 - 502
Target Start/End: Original strand, 6059502 - 6059993
Alignment:
Q  11 cacagatgacatgttccgagtacttgattgttgaaaaaatgatctcgaaactaaataatcaaaatactcagaaccaacctcttgtaaagtcattcctttt 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  6059502 cacaaatgacatgttccgagtacttgattgttgaaaaaatgatctcgaaactaaataatcaaaatactcagaaccaacctcttcaaaagtcattcctttt 6059601  T
Q  111 attggtggcaataaaagatcttcggccatccacaacaagattaaatcatttttctcaaattcataatctttgggatatagcgaacaataaacaaaacagc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6059602 attggtggcaataaaagatcttcggccatccacaacaagattaaatcatttttctcaaattcataatctttgggatatagcgaacaataaacaaaacagc 6059701  T
Q  211 gtttcaaatgtggagggagatagtgataactaattctcaatgccgaaatgaccttactttcactttcagataattcccaaatgtcactcttcagtacatt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6059702 gtttcaaatgtggagggagatagtgataactaattctcaatgccggaatgaccttactttcactttcagataattcccaaatgtcactcttcagtacatt 6059801  T
Q  311 actccaatccactatgccatgttttcttcgcagaatgcctccaagtgattgtgctgctaaaggcaatcccttgcactttttaacaatctctcggccaatt 410  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6059802 actccaatccaatatgccatgttttcttcgcagaatgcctccaagtgattgtgctgctaaaggcaatcccttgcactttttaacaatctctcggccaatt 6059901  T
Q  411 ttttctagatctgtagcattcctaccagatcccggggtaaaacatgcatggtttgcaaacactaaccaacaatcttcattcgacaactgatt 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6059902 ttttctagatctgtagcattcctaccagatcccggggtaaaacatgcatggtttgcaaacactaaccaacaatcttcattcgacaactgatt 6059993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 40 - 414
Target Start/End: Complemental strand, 4254378 - 4254013
Alignment:
Q  40 gttgaaaaaatgatctcgaaactaaataatcaaaatactcagaaccaacctcttgtaaagtcattccttttattggtggcaataaaagatcttcggccat 139  Q
    |||||||||||||||| ||| |||| | || ||||||| || ||||||| |||| ||||||  | || ||| |||  ||   |||||||||||| || ||    
T  4254378 gttgaaaaaatgatctagaagctaagtcattaaaatacccataaccaacttcttctaaagtattcccattttttgaaggtcttaaaagatcttcagctat 4254279  T
Q  140 ccacaacaagattaaatcatttttctcaaattcataatctttgggatatagcgaacaataaacaaaacagcgtttcaaatgtggagggagatagtgataa 239  Q
    |||||||||||| ||||||| | | |||||||| |||||||| ||||| |  |||||||||||||| || |||||||||   ||||||||||| || ||     
T  4254278 ccacaacaagatcaaatcatctctatcaaattcgtaatctttaggatacaaggaacaataaacaaagcaacgtttcaaacagggagggagataatggtat 4254179  T
Q  240 ctaattctcaatgccgaaatgaccttactttcactttcagataattcccaaatgtcactcttcagtacattactccaatccactatgccatgttttcttc 339  Q
    |||||| | | ||| | ||||| |||||| ||| |         |||||| |||| ||| || |||| |||| |||| |||  |||| ||  ||| | ||    
T  4254178 ctaatttttagtgctggaatgatcttactctcatt---------ttcccagatgttactattgagtatattattccagtcccttatgtcacatttacgtc 4254088  T
Q  340 gcagaatgcctccaagtgattgtgctgctaaaggcaatcccttgcactttttaacaatctctcggccaatttttt 414  Q
    |||  | ||| |||| ||| ||||||||||||||||||||||| || ||| |||||||||||  |||||||||||    
T  4254087 gcaacaagcccccaaatgactgtgctgctaaaggcaatcccttacattttctaacaatctctttgccaatttttt 4254013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 40 - 402
Target Start/End: Complemental strand, 4247259 - 4246906
Alignment:
Q  40 gttgaaaaaatgatctcgaaactaaataatcaaaatactcagaaccaacctcttgtaaagtcattccttttattggtggcaataaaagatcttcggccat 139  Q
    |||||||||||||| | |||||||||| || |||||  |||  ||||||  ||| ||||||| | ||  || |||| |||  |||||||||||| |||||    
T  4247259 gttgaaaaaatgatatggaaactaaatcattaaaatgatcattaccaactgcttctaaagtcttaccagtttttggaggctgtaaaagatcttctgccat 4247160  T
Q  140 ccacaacaagattaaatcatttttctcaaattcataatctttgggatatagcgaacaataaacaaaacagcgtttcaaatgtggagggagatagtgataa 239  Q
    |||||||||||| |  || | | | | |||||||| ||| || ||| | |  ||||| |||||||| |||||||||||||  || || ||||  ||||||    
T  4247159 ccacaacaagatcagttcctctctgtaaaattcatgatccttaggaaacaatgaacagtaaacaaagcagcgtttcaaataagggggtagatgttgataa 4247060  T
Q  240 ctaattctcaatgccgaaatgaccttactttcactttcagataattcccaaatgtcactcttcagtacattactccaatccact-atgccatgttttctt 338  Q
    |||||||||||||| | ||||| |||||| | | ||||         |||||||| ||| |  |||| |||| ||||||| ||| ||| ||||| | |||    
T  4247059 ctaattctcaatgctggaatgatcttactctgagtttc---------ccaaatgttactatgtagtagattattccaatc-actgatgtcatgtgtactt 4246970  T
Q  339 cgcagaatgcctccaagtgattgtgctgctaaaggcaatcccttgcactttttaacaatctctc 402  Q
    |||| || |||||||||||||| ||||||||| ||||||||||| || ||| ||||||||||||    
T  4246969 cgcaaaaggcctccaagtgattttgctgctaatggcaatcccttacattttctaacaatctctc 4246906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 410
Target Start/End: Original strand, 4314109 - 4314469
Alignment:
Q  41 ttgaaaaaatgatctcgaaactaaataatcaaaatactcagaaccaacctcttgtaaagtcattccttttattggtggcaataaaagatcttcggccatc 140  Q
    |||||||||||| || |||||||| | || |||||| |||  |||||| |||| ||||||| | || ||| | || | |  |||||||||||||||||||    
T  4314109 ttgaaaaaatgaccttgaaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagatcttcggccatc 4314208  T
Q  141 cacaacaagattaaatcatttttctcaaattcataatctttgggatatagcgaacaataaacaaaacagcgtttcaaatgtggagggagatagtgataac 240  Q
    || |||||||| ||||  | |||   ||||   |||||||| ||||| |  |||||||||||||| |||||||||||||  |||| |||||| |||||||    
T  4314209 cataacaagatcaaattgtctttacgaaatgtgtaatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagagagataatgataac 4314308  T
Q  241 taattctcaatgccgaaatgaccttactttcactttcagataattcccaaatgtcactcttcagtacattactccaatccactatgccatgttttcttcg 340  Q
    ||||||  | ||| | |||||  ||||| ||| ||||         |||||||| ||| || |||| |||| |||| ||    ||| |  |||| |||||    
T  4314309 taattcggagtgctggaatgatattactctcattttc---------ccaaatgttactatttagtatattattccagtcattgatgtcccgtttacttcg 4314399  T
Q  341 cagaatgcctccaagtgattgtgctgctaaaggcaatcccttgcactttttaacaatctctcggccaatt 410  Q
    ||  | ||| |||||||||||||||||||||||||||||||| || ||| || ||||||||  |||||||    
T  4314400 caacaagcccccaagtgattgtgctgctaaaggcaatcccttacattttctagcaatctctttgccaatt 4314469  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 4305548 - 4305611
Alignment:
Q  351 ccaagtgattgtgctgctaaaggcaatcccttgcactttttaacaatctctcggccaatttttt 414  Q
    ||||||||||||||||||||||||||||| |  || ||| ||| |||||||  |||||||||||    
T  4305548 ccaagtgattgtgctgctaaaggcaatccttgacattttctaataatctctttgccaatttttt 4305611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 4246855 - 4246819
Alignment:
Q  453 catgcatggtttgcaaacactaaccaacaatcttcat 489  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  4246855 catgcatggattgcaaacactgaccaacaatcttcat 4246819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 4253974 - 4253938
Alignment:
Q  453 catgcatggtttgcaaacactaaccaacaatcttcat 489  Q
    ||||||||||||||||||||  |||||||||||||||    
T  4253974 catgcatggtttgcaaacaccgaccaacaatcttcat 4253938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 41933820 - 41933615
Alignment:
Q  41 ttgaaaaaatgatctcgaaactaaataatcaaaatactcagaaccaacctcttgtaaagtcattccttttattggtggcaataaaagatcttcggccatc 140  Q
    |||||||||||| || ||| |||| | || |||||| |||  |||||| |||| ||||||||| ||  || ||   |||  ||||||| |||||||||||    
T  41933820 ttgaaaaaatgaccttgaagctaagtcattaaaatattcattaccaacttcttctaaagtcatcccacttcttttaggctgtaaaagaccttcggccatc 41933721  T
Q  141 cacaacaagattaaatcatttttctcaaattcataatctttgggatatagcgaacaataaacaaaacagcgtttcaaatgtggagggagatagtgataac 240  Q
    || |||||||| ||||  | ||| | |||||||||||| || |||||||  |||||||||||||| || ||||||||||  ||| ||||||| |||||||    
T  41933720 cataacaagatcaaattgtctttatgaaattcataatccttaggatataaggaacaataaacaaagcaacgtttcaaataaggaaggagataatgataac 41933621  T
Q  241 taattc 246  Q
    | ||||    
T  41933620 tgattc 41933615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 41933519 - 41933456
Alignment:
Q  351 ccaagtgattgtgctgctaaaggcaatcccttgcactttttaacaatctctcggccaatttttt 414  Q
    |||||||||||||||||||||||||||||||  || ||| |||||||||||  |||||||||||    
T  41933519 ccaagtgattgtgctgctaaaggcaatccctgacattttctaacaatctctttgccaatttttt 41933456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 400
Target Start/End: Original strand, 34802266 - 34802535
Alignment:
Q  122 taaaagatcttcggccatccacaacaagattaaatcatttttctcaaattcataatctttgggatatagcgaacaataaacaaaacagcgtttcaaatgt 221  Q
    |||||||||||| |||||||| |||||||| ||||| | ||| || ||||||||||| || ||||| || ||| |||||||||| || |  |||||        
T  34802266 taaaagatcttcagccatccataacaagatcaaatcgtctttatcgaattcataatccttaggatacagtgaataataaacaaagcatcccttcaagcag 34802365  T
Q  222 ggagggagatagtgataactaattctcaatgccgaaatgaccttactttcactttcagataattcccaaatgtcactcttcagtacattactccaatcca 321  Q
    ||||||||||| |||||||||||||  | ||||| ||||| |||||  ||| |         ||||||||||| | | || |||| |||| ||||||||     
T  34802366 ggagggagataatgataactaattcatagtgccggaatgatcttacactcatt---------ttcccaaatgttattatttagtatattattccaatccc 34802456  T
Q  322 ctatgccatgttttcttcgcagaatgcctccaagtgattgtgctgctaaaggcaatcccttgcactttttaacaatctc 400  Q
      ||| || |||| | |||||  |  || || |||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  34802457 tgatgtcacgtttacctcgcaacaaacccccgagtgattgtgctgctaaaggcagtcccttgcattttctaacaatctc 34802535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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