View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1430_low_8 (Length: 493)
Name: NF1430_low_8
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1430_low_8 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Complemental strand, 18559893 - 18559428
Alignment:
| Q |
13 |
aatattcatattcatgtttgtaacttaaaccatgaacaatatttactaaaatcaatattacctcttaatatgttttatatggatcttttaggttgtgaaa |
112 |
Q |
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| T |
18559893 |
aatattcatattcatgtttataacataaaccatgaacaatatttactaaaatcaatattacctcttaatatgttttatatggatcttttaggttgtgaaa |
18559794 |
T |
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| Q |
113 |
tggccagacctttcgaattgatagctgatattaacgacnnnnnnnncttctgaaaattggctgttaaggtgctggacaaatggacagtggttaacgatgg |
212 |
Q |
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| T |
18559793 |
tggctaaacctttcgaattgatagctgatattaacgataaaaaagacttctgaaaattgactgttaaggtgctgggcaaatggacagtggttaacgacgg |
18559694 |
T |
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| Q |
213 |
caaggagcactcaaagatgatcattgttgatgctgaggtcgtattatgtatatctgacctaatttattttcaacatttctaatgactattccctttcatt |
312 |
Q |
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| T |
18559693 |
caaggaacacttaaagatgatcattgttgatgttgaggtcgtattatgtatatctgacctaatttattttcaacatttctaatgactattctctttcatt |
18559594 |
T |
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| Q |
313 |
tgtggtttcagggaaatgacattcaagtgatgatcccaagtgcttacaaagttcaatacaaaaaacttattcaagaaaaaagtacctatactttaagtaa |
412 |
Q |
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| T |
18559593 |
tgtggtttcagggaaatgacattcaagtgatgatcccaactgcttacaaagttcaatacaaaaaacttattcaagaaaaaagtatctatactttaagtaa |
18559494 |
T |
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| Q |
413 |
ctttcaggttcaaactaatgatttggtgttcaaggcttctgatcatatgtgcaaactgaaatgggt |
478 |
Q |
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| T |
18559493 |
ctttcaggttcagactaatgatttggtgttcaaggcttctgatcatatgtgcaaactgaaatgggt |
18559428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 469
Target Start/End: Original strand, 17012081 - 17012229
Alignment:
| Q |
321 |
cagggaaatgacattcaagtgatgatcccaagtgcttacaaagttcaatacaaaaaacttattcaagaaaaaagtacctatactttaagtaactttcagg |
420 |
Q |
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| T |
17012081 |
cagggaaatgacattcaagtcttggtcccaactgcttataaatctcaatacgaaaaaatcattgaagaaaaatgtacatatactttaagtaactttcagg |
17012180 |
T |
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| Q |
421 |
ttcaaactaatgatttggtgttcaaggcttctgatcatatgtgcaaact |
469 |
Q |
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| T |
17012181 |
tccatttgaatgacttggtgttcaaggcctctgaacataagttcaaact |
17012229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 17011878 - 17011969
Alignment:
| Q |
160 |
ttctgaaaattggctgttaaggtgctggacaaatggacagtggttaacgatggcaaggagcactcaaagatgatcattgttgatgctgaggt |
251 |
Q |
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| T |
17011878 |
ttctgaaaactttctgtgaaggtgttggacaaatggactgttgttaaagatgggaaggagcactcagaaatggtcattgttgatgctaaggt |
17011969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 318 - 459
Target Start/End: Original strand, 11398461 - 11398602
Alignment:
| Q |
318 |
tttcagggaaatgacattcaagtgatgatcccaagtgcttacaaagttcaatacaaaaaacttattcaagaaaaaagtacctatactttaagtaactttc |
417 |
Q |
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| T |
11398461 |
tttcagggcaatgacattcaagttttgattccaactgcttacaaatctcaatatgaaaaactgattgaagaaaagagtacctatactttaagcaactttc |
11398560 |
T |
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| Q |
418 |
aggttcaaactaatgatttggtgttcaaggcttctgatcata |
459 |
Q |
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| T |
11398561 |
aggtccagatgaatgatttggtcttcaaggcctctgaacata |
11398602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 318 - 469
Target Start/End: Complemental strand, 135483 - 135333
Alignment:
| Q |
318 |
tttcagggaaatgacattcaagtgatgatcccaagtgcttacaaagttcaatacaaaaaacttattcaagaaaaaagtacctatactttaagtaactttc |
417 |
Q |
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| T |
135483 |
tttcagggaaatgacattcaagtcttggtcccaactgcttataaatctcaatacgaaaaa-tcattcaagaaaaatctacctatactttaagtaactttc |
135385 |
T |
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| Q |
418 |
aggttcaaactaatgatttggtgttcaaggcttctgatcatatgtgcaaact |
469 |
Q |
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| T |
135384 |
aggtccatttgaatgacttggtgttcaaggcctctgaacataagttcaaact |
135333 |
T |
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