View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1430_low_9 (Length: 452)

Name: NF1430_low_9
Description: NF1430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1430_low_9
NF1430_low_9
[»] chr4 (3 HSPs)
chr4 (18-439)||(37697351-37697772)
chr4 (22-439)||(38013313-38013735)
chr4 (281-387)||(37994043-37994149)
[»] chr2 (1 HSPs)
chr2 (119-331)||(25326308-25326518)


Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 37697772 - 37697351
Alignment:
Q  18 accaaactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagggtgtctcatgcgactcagaccgagtcgccaaccttggtctcg 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37697772 accaaactctcttcatgggatccaaacaacaatgactgctgcaacgacaaatggaagggtgtctcatgcgactcagaccgagtcgccaaccttggtctcg 37697673  T
Q  118 acgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccctttccttgacgacttctctctctcccgcatccccaacctcgtcgg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  37697672 acgacctcaacctccctaaacctgttccatttccaccctccatcactaacctcccttttcttgacgatttctctctctcccgcatccccaacctcgtcgg 37697573  T
Q  218 cactatcccaccgtccatctccaaactcaccaatcttgagtacctcaccctcagccataccataccagcatctccggcgagataccaaacactctttcaa 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37697572 cactatcccaccgtccatctccaaactcaccaatcttgattacctcaccctcagccataccataccagcatctccggcgagataccaaacactctttcaa 37697473  T
Q  318 agatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgcttcactctcctctctccctaagcttgaaataatctcttt 417  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37697472 atatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgcttcactctcctcgctccctaagcttgaaataatctcttt 37697373  T
Q  418 agacggcaaccaactcacaggt 439  Q
    ||||||||||||||||||||||    
T  37697372 agacggcaaccaactcacaggt 37697351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 22 - 439
Target Start/End: Original strand, 38013313 - 38013735
Alignment:
Q  22 aactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagggtgtctcatgcgactcagac------------cgagtcgccaacct 109  Q
    |||||||||||||||||||||||| ||  || ||||||||| |||||||||| |||||||||||| ||||||||            ||||| |  |||||    
T  38013313 aactctcttcatgggatccaaaca-ca--gactgctgcaacaacaaatggaaaggtgtctcatgcaactcagacacacaaaccaaccgagtagaaaacct 38013409  T
Q  110 tggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccctttccttgacgacttctctctctcccgcatccccaac 209  Q
    || ||||||  ||||  |||| ||||||||||||||| |||||||||||||| |||||||||||||||||  |    |||||||||||| ||||||||||    
T  38013410 tgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccctttccttaccttactctctctctcccacatccccaac 38013509  T
Q  210 ctcgtcggcactatcc---caccgtccatctccaaactcaccaatcttgagtacctcaccctcagccataccataccagcatctccggcgagataccaaa 306  Q
    || |||||||||||||   |||||||||||| ||||||||  || ||| ||||||||||||||||  ||||   |||| |||||||||||||||||||||    
T  38013510 cttgtcggcactatcctcccaccgtccatcttcaaactca--aaacttaagtacctcaccctcag--atac---accaacatctccggcgagataccaaa 38013602  T
Q  307 cactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgcttcactctcctctctccctaagcttgaa 406  Q
    ||| || ||| |||| ||||| || ||||| |||||||||  |||||||||||| ||||||||||||||  || ||||||||||||||||||| |||  |    
T  38013603 caccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaactaactggtcccctccccactacactctcctctctccctaaccttaca 38013702  T
Q  407 ataatctctttagacggcaaccaactcacaggt 439  Q
      |||| |||| |||||||||||||||| ||||    
T  38013703 gaaatcactttggacggcaaccaactcaaaggt 38013735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 281 - 387
Target Start/End: Original strand, 37994043 - 37994149
Alignment:
Q  281 accagcatctccggcgagataccaaacactctttcaaagatgaaaaccctattacggatcgacttcaccaacaacaaactcactggtcccctccctgctt 380  Q
    |||| |||||||||||||||||| |||||||| ||| |||| ||||||||| ||   |||||| ||| | ||||||||||||||||||||||||| || |    
T  37994043 accaacatctccggcgagatacctaacactctctcagagatcaaaaccctagtaaccatcgacatcagcgacaacaaactcactggtcccctccccgcat 37994142  T
Q  381 cactctc 387  Q
    |||||||    
T  37994143 cactctc 37994149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 331
Target Start/End: Original strand, 25326308 - 25326518
Alignment:
Q  119 cgacctcaacctccctaaacctgttccatttccaccctccat---cactaacctccctttccttgacgacttctctctctcccgcatccccaacctcgtc 215  Q
    ||||||||||||||| ||||  |||| | |||||||||||||   |||||||||||||||| |  ||    ||||| ||  |  |||||||||||||||     
T  25326308 cgacctcaacctccccaaacacgttcaaattccaccctccatattcactaacctccctttcataaactttctctctatcgacaacatccccaacctcgtt 25326407  T
Q  216 ggcactatcccaccgtccatctccaaactcaccaatcttgagtacctcaccctcagccataccataccagcatctccggcgagataccaaacactctttc 315  Q
    ||||||||||| || |||||||||||||||||||| ||||||  ||||| | ||||     |   || |||||||||||||||||||||||| | || ||    
T  25326408 ggcactatcccgccttccatctccaaactcaccaaacttgaggtcctcatcatcag-----cggcacaagcatctccggcgagataccaaactcactctc 25326502  T
Q  316 aaagatgaaaacccta 331  Q
    | |||| |||||||||    
T  25326503 acagattaaaacccta 25326518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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