View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14310_high_4 (Length: 374)
Name: NF14310_high_4
Description: NF14310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14310_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 100 - 365
Target Start/End: Complemental strand, 4795937 - 4795672
Alignment:
| Q |
100 |
agaaaacaaatgaatatgtaacagttatattatagataaacaaacgttcctcatccccatatcttgatatcttcttatctttatctataataatcttcac |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4795937 |
agaaaacaaataaatatgtaacagttatattatagataaacaaacgttcctcatccccatatcttgatatcttcttatctttatctataataatcttcac |
4795838 |
T |
|
| Q |
200 |
aatatattcaattaaatatctgcacaatcttataaactagcaagagttcgatattagctccaacagtacaatgaaaggatcattaatttctttggttgta |
299 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4795837 |
actatattcaattaaacatctgcacaatcttataaactagcaagagttcgatatttgctccaacagtacaatgaaaggatcattaatttctttggttgta |
4795738 |
T |
|
| Q |
300 |
acagcattaatggtaactttattttttcaacctcatcaacatatctcagcagcatcacagaataat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4795737 |
acagcattaatggtaactttattttttcaacctcatcaacatagctcagcagcatcacagaataat |
4795672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 39634879 - 39634940
Alignment:
| Q |
16 |
tcacttttaggatggctagattcacgtttgcagcttcccaccgcacaaccaaacaagtactt |
77 |
Q |
| |
|
||||||||||||||| || | |||||||||||| | ||||||||| |||||||| ||||||| |
|
|
| T |
39634879 |
tcacttttaggatggttaaactcacgtttgcagttccccaccgcataaccaaacgagtactt |
39634940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 4679830 - 4679793
Alignment:
| Q |
324 |
tttcaacctcatcaacatatctcagcagcatcacagaa |
361 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
4679830 |
tttcaaccacatcaacatatctcagcagcaccacagaa |
4679793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 2484637 - 2484698
Alignment:
| Q |
16 |
tcacttttaggatggctagattcacgtttgcagcttcccaccgcacaaccaaacaagtactt |
77 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | |||||||| |||||||| ||||||| |
|
|
| T |
2484637 |
tcacttttaggatggctagactcacgtttgcagttctccaccgcataaccaaacgagtactt |
2484698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University