View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14310_high_6 (Length: 368)
Name: NF14310_high_6
Description: NF14310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14310_high_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 368
Target Start/End: Complemental strand, 23126302 - 23125932
Alignment:
| Q |
9 |
cagagagaaaaatgtacataaaactgaaggacacaaaacctgacctctagtgtnnnnnnncaaacatcccagaagggtaatacaaaacaaccattgaggt |
108 |
Q |
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| T |
23126302 |
cagaaagaaaaatgtacataaaactgaaggacacaaaacctgacctctagtgtaaaaaaacaaacatcccagaagggtaatacaaaacaaccattgaggt |
23126203 |
T |
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| Q |
109 |
aacgaaaacacatatcctaatctaagagctagcggcgcaccacgtgcaaaatccaacgagtctgcgtacagacac--aactgaaatgtnnnnnnnnngag |
206 |
Q |
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| T |
23126202 |
aacgaaaacacatatcctaatctaagagctagcggcgcaccacgtgcaaaatccaacgagtctgcgtacagacacaaaactgaaatgtaaaaaaaaagag |
23126103 |
T |
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| Q |
207 |
gtgtgtgagctgacaagcctctttaagaatgggaatgaagttgcacccttagttttagtgaacgg--------taaagaaagtaagccgaaaaaggatat |
298 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
23126102 |
gtgtgtgagctgacaagcctctttaacaatgggaatgaagttgcacccatagttttagtgaacggtaaagaattaaagaaagtaaaccgaaaaaggatat |
23126003 |
T |
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| Q |
299 |
tgccattaaaaattgttctagataaaaat-aattctaaacatgtcatgagatatgaatccatagttatgtt |
368 |
Q |
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||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
23126002 |
tgccattaaaaattgttatagataaaaataaattttaaacatgtcatgagatatgaatccatagttatgtt |
23125932 |
T |
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