View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14310_high_8 (Length: 310)
Name: NF14310_high_8
Description: NF14310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14310_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 31102857 - 31102580
Alignment:
| Q |
20 |
ctaagatgggataatgcaatcagattctggtgggaacaatgcctcccagccatcttgctacatcatatgattgatatgatgactgctattggattagcct |
119 |
Q |
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| T |
31102857 |
ctaagatgggataatgcaatcagattctggtgggaacaatgcctcccagccatcttgctacatcatatgattgacatgatgactgctattggattagcct |
31102758 |
T |
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| Q |
120 |
gtgtgatcattacacagatgaaaggaaagacaagcctccatctacctcctacacccgatcctcccttcttatctttccttacaattaagcaacgtaaccc |
219 |
Q |
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| T |
31102757 |
gtgtgatcattacacagatgaaaggaaagacaagcctccatctacctcctacacccgatcctcccttcttatctttccttacaattaagcaacgtaacac |
31102658 |
T |
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| Q |
220 |
aggaattctgtagcttgcaatatgatcgatctgtgacaaatagaattaagaaaccttcctcatatgttacatgtgcct |
297 |
Q |
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| T |
31102657 |
aggaattctgtagcttgcaatatgattgatctgtgaccaatagaattaagaaaccttcctcatatgttacatgtgcct |
31102580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 31138249 - 31138345
Alignment:
| Q |
201 |
caattaagcaacgtaacccaggaattctgtagcttgcaatatgatcgatctgtgacaaatagaattaagaaaccttcctcatatgttacatgtgcct |
297 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31138249 |
caattaagcaacgtaacacaggaattctgtagcttgcaatatgatcgatctgtgaccaatagaattaagaaaccttcctcatatgttacatgtgcct |
31138345 |
T |
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