View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14310_low_1 (Length: 672)

Name: NF14310_low_1
Description: NF14310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14310_low_1
NF14310_low_1
[»] chr8 (14 HSPs)
chr8 (8-403)||(27067412-27067806)
chr8 (405-654)||(27067095-27067344)
chr8 (399-518)||(22651983-22652106)
chr8 (398-475)||(29447084-29447163)
chr8 (399-481)||(21465419-21465503)
chr8 (399-475)||(2572030-2572108)
chr8 (564-650)||(27080783-27080869)
chr8 (410-475)||(26902149-26902216)
chr8 (398-469)||(15816109-15816182)
chr8 (400-446)||(18170485-18170533)
chr8 (400-446)||(18634053-18634101)
chr8 (404-446)||(24669445-24669489)
chr8 (404-446)||(40332203-40332247)
chr8 (399-452)||(25566848-25566903)
[»] chr5 (11 HSPs)
chr5 (399-484)||(19579708-19579795)
chr5 (405-518)||(41091186-41091303)
chr5 (399-480)||(3966510-3966593)
chr5 (399-472)||(39698548-39698623)
chr5 (427-484)||(21542067-21542124)
chr5 (399-475)||(21522757-21522835)
chr5 (399-475)||(21533323-21533401)
chr5 (404-442)||(6326304-6326344)
chr5 (404-482)||(30098338-30098418)
chr5 (427-475)||(6401535-6401583)
chr5 (400-469)||(30080481-30080552)
[»] chr4 (3 HSPs)
chr4 (399-484)||(847958-848045)
chr4 (398-475)||(24613675-24613754)
chr4 (405-484)||(30982843-30982924)
[»] scaffold0044 (1 HSPs)
scaffold0044 (404-484)||(53192-53274)
[»] chr7 (5 HSPs)
chr7 (397-452)||(27945046-27945103)
chr7 (399-469)||(24339649-24339721)
chr7 (399-446)||(21880159-21880208)
chr7 (399-446)||(28155577-28155626)
chr7 (400-465)||(1885581-1885648)
[»] chr1 (9 HSPs)
chr1 (404-475)||(6612145-6612218)
chr1 (429-475)||(21032245-21032291)
chr1 (404-518)||(25361898-25362012)
chr1 (404-469)||(44482242-44482309)
chr1 (412-469)||(47989517-47989576)
chr1 (399-446)||(41877473-41877522)
chr1 (398-452)||(24577183-24577239)
chr1 (412-469)||(30173742-30173801)
chr1 (399-444)||(31015050-31015097)
[»] chr6 (11 HSPs)
chr6 (399-484)||(16766704-16766791)
chr6 (399-465)||(21395292-21395359)
chr6 (398-484)||(31384926-31385013)
chr6 (398-475)||(8365493-8365572)
chr6 (399-484)||(9107335-9107422)
chr6 (399-475)||(9195728-9195806)
chr6 (399-446)||(7977833-7977882)
chr6 (398-452)||(10770671-10770727)
chr6 (404-469)||(5970088-5970155)
chr6 (427-475)||(10294144-10294192)
chr6 (399-452)||(12696331-12696386)
[»] chr3 (13 HSPs)
chr3 (404-487)||(15796256-15796341)
chr3 (399-484)||(4987256-4987343)
chr3 (427-524)||(34185046-34185145)
chr3 (398-474)||(14209119-14209197)
chr3 (427-474)||(14216929-14216976)
chr3 (427-474)||(14223058-14223105)
chr3 (406-444)||(4990972-4991012)
chr3 (398-475)||(750592-750671)
chr3 (399-464)||(8039820-8039887)
chr3 (399-452)||(9800047-9800102)
chr3 (399-484)||(14832106-14832193)
chr3 (427-475)||(41961624-41961672)
chr3 (399-452)||(49651783-49651838)
[»] scaffold0018 (1 HSPs)
scaffold0018 (404-448)||(192250-192296)
[»] chr2 (3 HSPs)
chr2 (399-475)||(44860327-44860405)
chr2 (406-469)||(11223843-11223908)
chr2 (399-474)||(30717505-30717582)
[»] scaffold0049 (1 HSPs)
scaffold0049 (399-446)||(63780-63829)
[»] scaffold0004 (1 HSPs)
scaffold0004 (399-442)||(92814-92859)
[»] scaffold0136 (1 HSPs)
scaffold0136 (412-469)||(3829-3888)


Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Complemental strand, 27067806 - 27067412
Alignment:
Q  8 ctaatgctaaaattatccgtgacaagatctatcaaaaatctcagttattgcttacatggcaacataattttattttgnnnnnnncagtacaaactacttt 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||||||||||    
T  27067806 ctaatgctaaaattatcggtgacaagatctatcaaaaatctcagttattgcttacatgacaacataattttattttgaaaaaaacagtacaaactacttt 27067707  T
Q  108 aattctataaattattggttacagcaacactgaaactcactacactttccaccttatcccttccttcactctttctcaatgttatctctatagaaaccat 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067706 aattctataaattattgcttacagcaacactgaaactcactacactttccaccttatcccttccttcactctttctcaatgttatctctatagaaaccat 27067607  T
Q  208 tgaagaagtataaacataaatattcacataattcatgaagaaaatgcagaaacaacttggtcacattattcacaccctcttcatccttctctccatactc 307  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067606 tgaagaaatataaacataaatattcacataattcatgaagaaaatgcagaaacaacttggtcacattattcacaccctcttcatccttctctccatactc 27067507  T
Q  308 actgtaagtttannnnnnncttcatttcatcactattttgttgtccaataattaattgttgcataaatactttaaatgttagtatcttacactaaa 403  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27067506 actgtaagttta-ttttttcttcatttcatcactattttgttgtccaataattaattgttgcataaatactttaaatgatagtatcttacactaaa 27067412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 405 - 654
Target Start/End: Complemental strand, 27067344 - 27067095
Alignment:
Q  405 atttgagaaaattacataattctgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccggaacgtctaatctgaatagtg 504  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||||||||||||| ||||||||||||||||||| ||  ||||    
T  27067344 atttgagaaaattacataattctgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacatgtgtcgaacaccggaacgtctaatccgaggagtg 27067245  T
Q  505 tatgtgcttcatagttgatgtctcttttattattattctaattagttatgtttatgaataatgcaggttggtttagctataaatcatgaaaaagagaaga 604  Q
    |  ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067244 tccgtgcttcatagttgatgtctcttttattattattctaattgtttatgtttatgaataatgcaggttggtttagctataaatcatgaaaaagagaaga 27067145  T
Q  605 accaaaacccattcactccaaaagcttatgtaattcgttattgggataga 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27067144 accaaaacccattcactccaaaagcttatgtaattcgttattgggataga 27067095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 399 - 518
Target Start/End: Original strand, 22651983 - 22652106
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg--aacgtctaat 494  Q
    |||| ||||||| ||||| |||||||||  | |||||||||||||||||| |||||  |||||||||||||||||||||  |||||||   |||||||||    
T  22651983 ctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaat 22652082  T
Q  495 ctgaatagtgtatgtgcttcatag 518  Q
    | ||  |||||  |||||||||||    
T  22652083 ccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 29447163 - 29447084
Alignment:
Q  398 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    ||||| ||||||||||||| |||||||||  ||||| |||||||||||||| | |||  |||||||||||||||||||||    
T  29447163 actaataatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtcggacacgacatgtgtc 29447084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 399 - 481
Target Start/End: Original strand, 21465419 - 21465503
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacac 481  Q
    |||| ||||||| ||||| | |||||||  ||||||||||||||| |||| ||||| |||||||||||||||| ||||| |||||    
T  21465419 ctaataatttgaaaaaatcatataattcgatgtaattacaagtgttggtgtcgtgtcagtgtcggacacgacacgtgtccaacac 21465503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 475
Target Start/End: Complemental strand, 2572108 - 2572030
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    |||| ||||||| ||||| ||||||||   |||||||||||||||||||| |||||  ||||||||||||||| |||||    
T  2572108 ctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacgacacgtgtc 2572030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 564 - 650
Target Start/End: Complemental strand, 27080869 - 27080783
Alignment:
Q  564 aatgcaggttggtttagctataaatcatgaaaaagagaagaaccaaaacccattcactccaaaagcttatgtaattcgttattggga 650  Q
    ||||||||||||||||||  |  |||||| |  ||| || |||||||||||||||||| | ||||||| || |||||||||||||||    
T  27080869 aatgcaggttggtttagcagtggatcatgcaggagacaaaaaccaaaacccattcactgcgaaagcttttgcaattcgttattggga 27080783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 475
Target Start/End: Complemental strand, 26902216 - 26902149
Alignment:
Q  410 agaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    ||||||| |||||||||  |||||||| | ||||||||| ||| |||||||||||||||||| |||||    
T  26902216 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtc 26902149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 469
Target Start/End: Complemental strand, 15816182 - 15816109
Alignment:
Q  398 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 469  Q
    ||||| ||||||| ||||| ||||||||   |||||||| ||||||||||| |||||  |||||||||||||||    
T  15816182 actaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgaca 15816109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 18170533 - 18170485
Alignment:
Q  400 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 446  Q
    ||||||||||| |||||||||||||||  ||||||||||| ||||||||    
T  18170533 taaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggtg 18170485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 18634101 - 18634053
Alignment:
Q  400 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 446  Q
    ||||||||||| |||||||||||||||  ||||||||||| ||||||||    
T  18634101 taaaaatttgaaaaaattacataattcaatgtaattacaaatgtcggtg 18634053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 24669445 - 24669489
Alignment:
Q  404 aatttgagaaaattacataattc--tgtaattacaagtgtcggtg 446  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||    
T  24669445 aatttgaggaaattacataattcagtgtaattacaagtgtcggtg 24669489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 446
Target Start/End: Original strand, 40332203 - 40332247
Alignment:
Q  404 aatttgagaaaattacataattc--tgtaattacaagtgtcggtg 446  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||    
T  40332203 aatttgagaaaatcacataattcagtgtaattacaagtgtcggtg 40332247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 25566848 - 25566903
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 452  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  25566848 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 25566903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 399 - 484
Target Start/End: Original strand, 19579708 - 19579795
Alignment:
Q  399 ctaaaaatttgagaaaattacataattctgt--aattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 484  Q
    |||| ||||||||||||| ||||||||  ||  ||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||    
T  19579708 ctaataatttgagaaaatcacataatttagtgcaattacaagtgtcggtgtcgtgtcagtgtcggacacgacatatgtctaacaccgg 19579795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 405 - 518
Target Start/End: Complemental strand, 41091303 - 41091186
Alignment:
Q  405 atttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacacc--ggaacgtctaatctgaat 500  Q
    |||||||||||| |||||||||  |||||||| | |||||| || ||||| | |||||||| ||||||||||| ||||||  || |||||||||||||      
T  41091303 atttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcaatgtcggacgcgacatgtgtctaacaccaaggcacgtctaatctgagg 41091204  T
Q  501 agtgtatgtgcttcatag 518  Q
    |||||  |||||||||||    
T  41091203 agtgttcgtgcttcatag 41091186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 3966510 - 3966593
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaaca 480  Q
    |||| ||||||||||||| ||| |||||  |||||||| | ||||||||| ||||| |||||||||||| ||||||||| ||||    
T  3966510 ctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacaacatgtgtccaaca 3966593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 472
Target Start/End: Original strand, 39698548 - 39698623
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgt 472  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||| ||| |||||  ||||||||||||||||||    
T  39698548 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacatgt 39698623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 484
Target Start/End: Original strand, 21542067 - 21542124
Alignment:
Q  427 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 484  Q
    |||||||||||||||||||| |||||  ||||||||||||||| |||||  |||||||    
T  21542067 tgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgg 21542124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 21522757 - 21522835
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    |||| ||||| | ||||| |||||||||  ||||||||||| |||||||| |||||  ||||||||||||||| |||||    
T  21522757 ctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 21522835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 21533323 - 21533401
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    |||| ||||| | ||||| |||||||||  ||||||||||| |||||||| |||||  ||||||||||||||| |||||    
T  21533323 ctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtc 21533401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 442
Target Start/End: Complemental strand, 6326344 - 6326304
Alignment:
Q  404 aatttgagaaaattacataattc--tgtaattacaagtgtc 442  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  6326344 aatttgagaaaattacataattcagtgtaattacaagtgtc 6326304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 482
Target Start/End: Original strand, 30098338 - 30098418
Alignment:
Q  404 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacacc 482  Q
    ||||||||||||| |||||||||  |||||||| |  |||||||  || || |||||||||||||||| |||||| |||||    
T  30098338 aatttgagaaaatcacataattcaatgtaattatagatgtcggtatcgagtcagtgtcggacacgacacgtgtcagacacc 30098418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 6401535 - 6401583
Alignment:
Q  427 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    |||||||| | ||||||||| ||||| |||||||||||||||| |||||    
T  6401535 tgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgacacgtgtc 6401583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 30080552 - 30080481
Alignment:
Q  400 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 469  Q
    ||||| ||||||||||| |||||||||  |||||| |||||| ||||||  |||| ||||||||||| ||||    
T  30080552 taaaattttgagaaaatgacataattcaatgtaatcacaagtatcggtgtggtgttagtgtcggacatgaca 30080481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 399 - 484
Target Start/End: Original strand, 847958 - 848045
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 484  Q
    |||| |||||||||||||||||||||||  | |||||||||||||||||| | |||  ||||||||||||| | ||||| ||||||||    
T  847958 ctaataatttgagaaaattacataattcactataattacaagtgtcggtgtcttgttggtgtcggacacgaaacgtgtcgaacaccgg 848045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 24613754 - 24613675
Alignment:
Q  398 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    ||||| ||||||||||||| |||||||||  ||||| |||||||||||||| | |||  ||||| ||||||||| |||||    
T  24613754 actaataatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacgacacgtgtc 24613675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 484
Target Start/End: Complemental strand, 30982924 - 30982843
Alignment:
Q  405 atttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 484  Q
    |||||||||||| ||||| |||  |||||||| ||||||||||| |||||  ||||| ||||||||| |||||  |||||||    
T  30982924 atttgagaaaatcacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgg 30982843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 53192 - 53274
Alignment:
Q  404 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 484  Q
    ||||||||||||| |||||||||  |||||||| |||||||||||||||||  |||||||||| |||| |||||  |||||||    
T  53192 aatttgagaaaatcacataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatgacacgtgtccgacaccgg 53274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 397 - 452
Target Start/End: Original strand, 27945046 - 27945103
Alignment:
Q  397 cactaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 452  Q
    |||||| |||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  27945046 cactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgt 27945103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 399 - 469
Target Start/End: Original strand, 24339649 - 24339721
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 469  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||  |||||||||||||||    
T  24339649 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgaca 24339721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 446
Target Start/End: Original strand, 21880159 - 21880208
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 446  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  21880159 ctaataatttgagaaaattacataattcagtgtaattacaagtgtcggtg 21880208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 446
Target Start/End: Original strand, 28155577 - 28155626
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 446  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  28155577 ctaataatttgagaaaattacataattcggtgtaattacaagtgtcggtg 28155626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 1885581 - 1885648
Alignment:
Q  400 taaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacac 465  Q
    ||||| ||||| ||||| |||||||||  |||||| ||||||||||||| |||||  |||||||||||    
T  1885581 taaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 1885648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 475
Target Start/End: Complemental strand, 6612218 - 6612145
Alignment:
Q  404 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    ||||||| |||||||||||||||  |||||||||||||||||||| |||||   |||||||||||| |||||||    
T  6612218 aatttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggacacgatatgtgtc 6612145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 475
Target Start/End: Original strand, 21032245 - 21032291
Alignment:
Q  429 taattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    ||||||||| |||||||| |||||| |||||||||||||||||||||    
T  21032245 taattacaaatgtcggtgtcgtgtgggtgtcggacacgacatgtgtc 21032291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 518
Target Start/End: Original strand, 25361898 - 25362012
Alignment:
Q  404 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccggaacgtctaatctgaata 501  Q
    ||||||||||||| |||||||||  |||||||| | ||||| ||| |||||  |||||||||||||||  ||||  ||||||||||  |||||| ||| |    
T  25361898 aatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacacgaca--tgtccgacaccggaacacctaatccgaaga 25361995  T
Q  502 gtgtatgtgcttcatag 518  Q
    ||||  |||||||||||    
T  25361996 gtgtccgtgcttcatag 25362012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 404 - 469
Target Start/End: Original strand, 44482242 - 44482309
Alignment:
Q  404 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 469  Q
    ||||||||||||| |||||||||  |||||||| | ||||||||| |||||  |||||||||||||||    
T  44482242 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgaca 44482309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 469
Target Start/End: Original strand, 47989517 - 47989576
Alignment:
Q  412 aaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 469  Q
    ||||| |||||||||  |||||||||||||||||||| |||||  |||||||||||||||    
T  47989517 aaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgaca 47989576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 41877522 - 41877473
Alignment:
Q  399 ctaaaaatttgagaaaattacataatt--ctgtaattacaagtgtcggtg 446  Q
    |||| ||||||||||||||||||||||   ||||||||||||||||||||    
T  41877522 ctaataatttgagaaaattacataatttagtgtaattacaagtgtcggtg 41877473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 24577239 - 24577183
Alignment:
Q  398 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 452  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  24577239 actaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 24577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 469
Target Start/End: Complemental strand, 30173801 - 30173742
Alignment:
Q  412 aaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 469  Q
    |||||||||||| ||  |||||||||||||||||||| |||||  || ||||||||||||    
T  30173801 aaaattacataactcagtgtaattacaagtgtcggtgtcgtgtccgtatcggacacgaca 30173742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 31015050 - 31015097
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcgg 444  Q
    |||| ||||||||||||| |||||||||  ||||||||||||||||||    
T  31015050 ctaataatttgagaaaatcacataattcagtgtaattacaagtgtcgg 31015097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 484
Target Start/End: Original strand, 16766704 - 16766791
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 484  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||  ||||||||||| ||| |||||  |||||||    
T  16766704 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgg 16766791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 399 - 465
Target Start/End: Complemental strand, 21395359 - 21395292
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacac 465  Q
    |||| ||||||||||||| ||||||||   |||||||||||||||||||| ||||| ||||||||||||    
T  21395359 ctaataatttgagaaaat-acataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtcggacac 21395292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 484
Target Start/End: Original strand, 31384926 - 31385013
Alignment:
Q  398 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 484  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||| ||| ||||| ||||| |||||||||| |||||  |||||||    
T  31384926 actaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgt-agtgttggacacgacacgtgtcctacaccgg 31385013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 8365572 - 8365493
Alignment:
Q  398 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    ||||| ||||||| || || |||||||||  |||||||||||||||||||| |||||  || |||||||||||| |||||    
T  8365572 actaataatttgaaaatatcacataattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtc 8365493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 484
Target Start/End: Complemental strand, 9107422 - 9107335
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 484  Q
    |||| ||||||| ||||| ||| |||||  |||||||||||||||||||| |||||  ||||||||||| || ||||||  |||||||    
T  9107422 ctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacgtgtgtccgacaccgg 9107335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 475
Target Start/End: Complemental strand, 9195806 - 9195728
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    |||| ||||||||||||| ||||||||   |||||||| | ||||||||| |||||  ||||| |||||||||||||||    
T  9195806 ctaataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtctgacacgacatgtgtc 9195728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 7977882 - 7977833
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 446  Q
    |||| ||||||| |||||||||||||||  ||||||||||||||||||||    
T  7977882 ctaataatttgaaaaaattacataattcagtgtaattacaagtgtcggtg 7977833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 452
Target Start/End: Complemental strand, 10770727 - 10770671
Alignment:
Q  398 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 452  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  10770727 actaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgt 10770671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 469
Target Start/End: Complemental strand, 5970155 - 5970088
Alignment:
Q  404 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 469  Q
    ||||||| ||||| |||||||||  ||||||||||| ||| |||| |||||  |||||||||||||||    
T  5970155 aatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggacacgaca 5970088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 475
Target Start/End: Original strand, 10294144 - 10294192
Alignment:
Q  427 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    |||||||| | ||||||||| |||||  |||||||||||||||||||||    
T  10294144 tgtaattatatgtgtcggtgtcgtgttggtgtcggacacgacatgtgtc 10294192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 12696331 - 12696386
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 452  Q
    |||| ||||||| |||||||||||||||  |||||||||||||||| ||| |||||    
T  12696331 ctaataatttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcgtgt 12696386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 15796341 - 15796256
Alignment:
Q  404 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccggaac 487  Q
    ||||||| ||||| | |||||||  ||||||||||| |||||||| |||||  ||||||||||| ||| ||||| |||||||||||    
T  15796341 aatttgaaaaaatcatataattcagtgtaattacaattgtcggtgtcgtgtaggtgtcggacacaacacgtgtccaacaccggaac 15796256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 484
Target Start/End: Complemental strand, 4987343 - 4987256
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 484  Q
    |||| ||||||| ||||| |||||||||  ||||||||||||||| |||| |||||  |||| |||||||||| |||||  |||||||    
T  4987343 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtccgacaccgg 4987256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 524
Target Start/End: Complemental strand, 34185145 - 34185046
Alignment:
Q  427 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg--aacgtctaatctgaatagtgtatgtgcttcatagttgatg 524  Q
    |||||||||||||||||||| |||||   ||||||||| ||||||||||  |||||||   ||| |||||| ||  |||||  |||||||||||||||||    
T  34185145 tgtaattacaagtgtcggtgtcgtgtccatgtcggacaagacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagttgatg 34185046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 14209119 - 14209197
Alignment:
Q  398 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 474  Q
    ||||| ||||| | ||||| |||||||||  |||||||||||||||| ||| |||||  ||||||||||||||| ||||    
T  14209119 actaataattttaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacgacacgtgt 14209197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 474
Target Start/End: Original strand, 14216929 - 14216976
Alignment:
Q  427 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 474  Q
    |||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  14216929 tgtaattacaagtgtccgtgtcgtgttagtgtcggacacgacacgtgt 14216976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 474
Target Start/End: Original strand, 14223058 - 14223105
Alignment:
Q  427 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 474  Q
    |||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  14223058 tgtaattacaagtgtccgtgtcgtgttagtgtcggacacgacacgtgt 14223105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 444
Target Start/End: Complemental strand, 4991012 - 4990972
Alignment:
Q  406 tttgagaaaattacataattc--tgtaattacaagtgtcgg 444  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  4991012 tttgagaaaattacataattcagtgtaattacaagtgtcgg 4990972  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 750671 - 750592
Alignment:
Q  398 actaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    ||||| ||||||| || || |||||||||  || ||||||||||||||||| |||||  || |||||||||||| |||||    
T  750671 actaataatttgaaaatatcacataattcgctgcaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtc 750592  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 8039887 - 8039820
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggaca 464  Q
    |||| ||||||||||||||| |||||||  |||||||| | ||||||||| |||||  ||||||||||    
T  8039887 ctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggaca 8039820  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 9800047 - 9800102
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 452  Q
    |||| |||||||||||||||||||||||  |||||||  ||||||||||| |||||    
T  9800047 ctaataatttgagaaaattacataattccgtgtaattgtaagtgtcggtgtcgtgt 9800102  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 484
Target Start/End: Original strand, 14832106 - 14832193
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtcaaacaccgg 484  Q
    |||| ||||||| ||||| |||||| ||  |||||||||||||||| ||| |||||  || |||||||||||| |||||  |||||||    
T  14832106 ctaataatttgaaaaaatcacataactcaatgtaattacaagtgtcagtgtcgtgtcggtatcggacacgacacgtgtccgacaccgg 14832193  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 475
Target Start/End: Complemental strand, 41961672 - 41961624
Alignment:
Q  427 tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    |||||||||||||||||||| |||||  || |||||||||||| |||||    
T  41961672 tgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtc 41961624  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 452
Target Start/End: Complemental strand, 49651838 - 49651783
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgt 452  Q
    |||| ||||||| ||||| |||||||||  |||||||||||||||||||| |||||    
T  49651838 ctaataatttgaaaaaatcacataattcactgtaattacaagtgtcggtgtcgtgt 49651783  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 448
Target Start/End: Complemental strand, 192296 - 192250
Alignment:
Q  404 aatttgagaaaattacataattc--tgtaattacaagtgtcggtgcc 448  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  192296 aatttgagaaaattacataattcggtgtaattacaagtgtctgtgcc 192250  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 44860327 - 44860405
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgtc 475  Q
    |||| |||||||||||||  ||||||||  |||||||| | ||||||||| |||||  |||| ||||||||||||||||    
T  44860327 ctaataatttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacacgacatgtgtc 44860405  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 469
Target Start/End: Complemental strand, 11223908 - 11223843
Alignment:
Q  406 tttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 469  Q
    ||||| ||||| |||||||||  |||||||||||||||||||| | |||  |||||||||||||||    
T  11223908 tttgaaaaaataacataattcagtgtaattacaagtgtcggtgtcatgtaggtgtcggacacgaca 11223843  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 474
Target Start/End: Complemental strand, 30717582 - 30717505
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgacatgtgt 474  Q
    |||| ||||||| ||||| |||||||||  ||||||||||||||||| || |||||   |||||||||||||| ||||    
T  30717582 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgatgtcgtgtcgttgtcggacacgacacgtgt 30717505  T

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Target: scaffold0049 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 446
Target Start/End: Original strand, 63780 - 63829
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtcggtg 446  Q
    |||| |||||||||||||||||||||||  || |||||||||||||||||    
T  63780 ctaataatttgagaaaattacataattcagtgcaattacaagtgtcggtg 63829  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 442
Target Start/End: Original strand, 92814 - 92859
Alignment:
Q  399 ctaaaaatttgagaaaattacataattc--tgtaattacaagtgtc 442  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||    
T  92814 ctaataatttgagaaaattacataattcagtgtaattacaagtgtc 92859  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 412 - 469
Target Start/End: Complemental strand, 3888 - 3829
Alignment:
Q  412 aaaattacataattc--tgtaattacaagtgtcggtgccgtgtgagtgtcggacacgaca 469  Q
    ||||| |||||||||  |||||||||||||||| ||| |||||  |||||||||||||||    
T  3888 aaaatcacataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggacacgaca 3829  T

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