View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14310_low_12 (Length: 255)
Name: NF14310_low_12
Description: NF14310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14310_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 34547780 - 34548006
Alignment:
| Q |
19 |
caagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatactcatcttttaaaccatcattacttttgttta |
118 |
Q |
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| T |
34547780 |
caagtaccatcagattgttgaaccatacccttattctcaactaccctccaattctcaggaatgtgatattcatcttttaaaccatcattacttttgttta |
34547879 |
T |
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| Q |
119 |
atagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtgttcctgcaattccatgcaagtaaacctccatgttatgtgcactaac |
218 |
Q |
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| T |
34547880 |
atagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtgttcctgcaattccatgcaagtaaacctccatgttatgtgcactaac |
34547979 |
T |
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| Q |
219 |
cccactcttcaagtacttagattcttc |
245 |
Q |
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| T |
34547980 |
cccactcttcaagtacttagattcttc |
34548006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 34556273 - 34556495
Alignment:
| Q |
19 |
caagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatactcatcttttaaaccatcattacttttgttta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34556273 |
caagtaccatcagattgttgaaccatacccttattctccactaccctccaattctcaggaatatgatactcatcttttaaaccatcattacttttgttta |
34556372 |
T |
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| Q |
119 |
atagtgcaatgtcacgattcacctctaaattgaaccctcctttacttccttgtgttcctgcaattccatgcaagtaaacctccatgttatgtgcactaac |
218 |
Q |
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| T |
34556373 |
atagtgcaatgtcacgattcacctccaaattgaaccctcctttgcttccttgtgttcctgcaattccatgcaagtaaacctccatgttatgttcactaac |
34556472 |
T |
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| Q |
219 |
cccactcttcaagtacttagatt |
241 |
Q |
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| T |
34556473 |
accactcttcaagtactttgatt |
34556495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 4674398 - 4674568
Alignment:
| Q |
32 |
attgttgaaccatacccttattctccactaccctccaattctcaggaatatgatactcatcttttaaaccatcattacttttgtttaatagtgcaatgtc |
131 |
Q |
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||||||||||||||||||||||||| || |||||||| | | || | | | || ||||||||||||||||| |||| || | |||||||| || |
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| T |
4674398 |
attgttgaaccatacccttattctctacaaccctccatgacactggcacaaggtattcatcttttaaaccatccaatgttttattcacaagtgcaatatc |
4674497 |
T |
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| Q |
132 |
acgattcacctctaaattgaaccctcctttacttccttgtgttcctgcaattccatgcaagtaaacctcca |
202 |
Q |
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| T |
4674498 |
acgattaacctcaagtttgaacactcttttactcccttgtgttcctgccactccatgcaaataagcctcca |
4674568 |
T |
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