View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14310_low_14 (Length: 233)
Name: NF14310_low_14
Description: NF14310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14310_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 2334440 - 2334304
Alignment:
| Q |
80 |
tgaagctaaagcaagaaccagtagaagacaccaaccgacaataaaaccacggtggttttaacggtggccagatcgaaatcatatctgttgaagttggagc |
179 |
Q |
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| T |
2334440 |
tgaagctaaagcaagaaccagtagaagacaccaaacgacaataaaaccacagtggttttagcggtggccggatcgaaatcagatctgttgaagttggagc |
2334341 |
T |
|
| Q |
180 |
agttacagagaagtggtttagagggggaggctttggt |
216 |
Q |
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| T |
2334340 |
agttacagagaagcggtttggagggggaggctttggt |
2334304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 17037356 - 17037220
Alignment:
| Q |
80 |
tgaagctaaagcaagaaccagtagaagacaccaaccgacaataaaaccacggtggttttaacggtggccagatcgaaatcatatctgttgaagttggagc |
179 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||| |||||||||| ||||||| |
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| T |
17037356 |
tgaagctaaagtcagaaccagtagaagacaccaaccgacaataaaaccacagtggttttaacggtggccggatcgaagtcagatctgttgaaattggagc |
17037257 |
T |
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| Q |
180 |
agttacagagaagtggtttagagggggaggctttggt |
216 |
Q |
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| T |
17037256 |
aattacagagaagtggtttggagggggaggctttggt |
17037220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 216
Target Start/End: Complemental strand, 49186570 - 49186452
Alignment:
| Q |
100 |
gtagaagacaccaaccgacaataaaaccacggtggttttaacggtggccagatcgaaatcatatctgttgaagttggagc-agttacagagaagtggttt |
198 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | |||||||||||||||| |
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| T |
49186570 |
gtagaagacaccaaccgccaataaaaccacggtggttttagtggtggccagatcgaaatcagatctgttgaagttggagcaaactacagagaagtggttt |
49186471 |
T |
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| Q |
199 |
aga-gggggaggctttggt |
216 |
Q |
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| T |
49186470 |
ggaggggggaggctttggt |
49186452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 8091953 - 8091817
Alignment:
| Q |
80 |
tgaagctaaagcaagaaccagtagaagacaccaaccgacaataaaaccacggtggttttaacggtggccagatcgaaatcatatctgttgaagttggagc |
179 |
Q |
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||||||||||| ||||| |||||||||||||||||| |||||||||||| |||||||||| ||||||| | ||||| ||| || || |||||||||||| |
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| T |
8091953 |
tgaagctaaagtaagaaacagtagaagacaccaacccacaataaaaccatggtggttttagtggtggccgggtcgaactcagatatggtgaagttggagc |
8091854 |
T |
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| Q |
180 |
agttacagagaagtggtttagagggggaggctttggt |
216 |
Q |
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||| | | ||||||||||| ||||||||||||||||| |
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| T |
8091853 |
agtcaaatagaagtggtttggagggggaggctttggt |
8091817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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