View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14310_low_2 (Length: 427)
Name: NF14310_low_2
Description: NF14310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14310_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 4 - 409
Target Start/End: Complemental strand, 38894816 - 38894410
Alignment:
| Q |
4 |
agaacacagtcgaaactggttattgaaaatgaatcgaaactactaactattaaatccaaaaattaaacatcaattgcaacattgcatttgatatttgtag |
103 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38894816 |
agaacacagtcgaaactggtttttgaaaatgaatcgaaactactaactattaaatccaaaaattaaacatcaattgcaacattgcatttgatatttgtag |
38894717 |
T |
|
| Q |
104 |
aactaatggttcatcaaacataatccgagataaagacgtgacaggggaagggagagctttggtgcatcctaaacaaattgaaagatagtgctttattaca |
203 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38894716 |
aactaatggttcatcagacataatccgggataaagacgtgacaggggaagggagagctttggtgcatcctaaacaaattgaaagatagtgctttattaca |
38894617 |
T |
|
| Q |
204 |
agataaa-caaactaattaaactcaatctaaacatgtgaaacagttctgttatgagaatgagattgctccaactctccattggttccggcttcctcttcg |
302 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38894616 |
agataaaacaaactaattaaactcaatctaaacatgtgaaacagttctgttatgagaatgagattgctccaactctccattggttccggcttcctcttcg |
38894517 |
T |
|
| Q |
303 |
ttctcacctgacatctcctccaaagattttccatttgcctcaggcaccaagaaagtaaaaaggaatcccaaaatgttaaccacacccaagagaagcagtg |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38894516 |
ttctcacctgacatctcctccaaagattttccatttgcctcgggcaccaagaaagtaaaaaggaatcccaaaatgttaaccacacccaagagaagcagtg |
38894417 |
T |
|
| Q |
403 |
aattctt |
409 |
Q |
| |
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||||||| |
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| T |
38894416 |
aattctt |
38894410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 409
Target Start/End: Complemental strand, 38885341 - 38885224
Alignment:
| Q |
292 |
cttcctcttcgttctcacctgacatctcctccaaagattttccatttgcctcaggcaccaagaaagtaaaaaggaatcccaaaatgttaaccacacccaa |
391 |
Q |
| |
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||||||| || |||||||||||||| ||||| |||||||||||||||||||| || || ||||||||| | | ||| |||||||||||| || ||||| |
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| T |
38885341 |
cttcctcatcattctcacctgacatttcctctaaagattttccatttgcctcgggtactaagaaagtacacaagaaccccaaaatgttacaaactcccaa |
38885242 |
T |
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| Q |
392 |
gagaagcagtgaattctt |
409 |
Q |
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|||| || ||||||||| |
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| T |
38885241 |
cagaatcaatgaattctt |
38885224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 30619558 - 30619641
Alignment:
| Q |
305 |
ctcacctgacatctcctccaaagattttccatttgcctcaggcaccaagaaagtaaaaaggaatcccaaaatgttaaccacacc |
388 |
Q |
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|||||| ||||| ||||| | ||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
30619558 |
ctcaccagacatttcctcaagagattttccctttgtctcaggcaccaagaaagtaaaacagaatcccaaaatgttaacaacacc |
30619641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 30614804 - 30614881
Alignment:
| Q |
305 |
ctcacctgacatctcctccaaagattttccatttgcctcaggcaccaagaaagtaaaaaggaatcccaaaatgttaac |
382 |
Q |
| |
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|||||| ||||| ||||| | |||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
30614804 |
ctcaccagacatttcctcaagagatcttccctttgcctcaggcaccaagaaagtaaaacagaatcccaaaatggtaac |
30614881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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