View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14310_low_3 (Length: 392)
Name: NF14310_low_3
Description: NF14310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14310_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 21 - 392
Target Start/End: Complemental strand, 2109761 - 2109405
Alignment:
| Q |
21 |
tttttagctccactcaggtctgttcttcaatacaatattaattttttcttgtatatttttagttgatgttatagtacactgtgaattatcttacaagttt |
120 |
Q |
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| T |
2109761 |
tttttagctccactcacgtctgttcttcaatacaatattaattttttcttgtatatttttagttgatgttatagtacactgtgaattatcctataaattt |
2109662 |
T |
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| Q |
121 |
cttaaaagttatatgtaggatcgttccattgtactataacataagctataagttttgaaaacccatttgtcaatgaaaaataggtatttaagatccaaaa |
220 |
Q |
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| T |
2109661 |
cttaaaagttatatgtaggatcgttccattgtactataacataagctataagttttgaaaacccatttgtcaatcaaaaataggtatttaagatccaaaa |
2109562 |
T |
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| Q |
221 |
gaaggggtaggtaatcttccttgagagctactttaatataaatacaaaacttttgcagttttaacatctttgagtttgagtttatatagttttatgccct |
320 |
Q |
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| T |
2109561 |
gaaggggtagg---------------gctactttaatataaatacaaaacttttgcagttttaacatctttgagtttgagtttatatagttttatgccct |
2109477 |
T |
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| Q |
321 |
atcaaattttcatggatttttctagtcttttttcacttgaaacatagaggaaggtagcaattgagtgcagaa |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2109476 |
atcaaattttcatggatttttctagtcttttttcacttgaaacatagaggaaggtagcaattgagtgcagaa |
2109405 |
T |
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