View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14311_low_1 (Length: 634)
Name: NF14311_low_1
Description: NF14311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14311_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 199 - 464
Target Start/End: Complemental strand, 8446141 - 8445876
Alignment:
| Q |
199 |
ctctattgttctaatctttgtccctaactctttccctttgtaatccctcaactgttttcttccccgtctccctttgatcttgtttctattgtggatt-gg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8446141 |
ctctattgttctaatctttgtccctaactctttccctttgtaatccctcaactgttttcttccccgtctccctttgatcttgtttctattgtggatttgg |
8446042 |
T |
|
| Q |
298 |
aatactctgtctcccaaaagcgacatcgcccctgcccatgccttattcaaacttgggaccatagcatacactagtggagttccagggttttcattcaaga |
397 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8446041 |
aatactctgtctcccaaaagcgacatcacccctgcccatgctttattcaaacttgggaccatagcatacactagtggagttccagggttttcattcaaga |
8445942 |
T |
|
| Q |
398 |
ttatgatagcaacaagtataaattagtaacaaaatcacttaacttggataataataattagaaggcc |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8445941 |
ttatgatagcaacaagtataaattagtaac-aaatcacttaacttggataataataattagaaggcc |
8445876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8446411 - 8446166
Alignment:
| Q |
1 |
ctaaattgttaagctttgattctaaattttgattatcttgaaaaatgtcacttggcctctagtgatctaggaagctaaattatggcacactagctattcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8446411 |
ctaaattgttaagctttgattctaaattttgattatcttgaaaaatgtcac-----ctccagtgatctaggaagctaaattatggcacactagctattcc |
8446317 |
T |
|
| Q |
101 |
tttggcataaaaactaatataatataatctaaagtggatttctaggggtacgaacataagagactaaagtatctaatttttgtaaattacaggg------ |
194 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8446316 |
tttggcataaaaactaatataatctaatctaaagtggatttctaggggtacgaacataagagactaaagtatctaatttttgtaaattacagggatcttc |
8446217 |
T |
|
| Q |
195 |
-----tatgctctattgttctaatctttgtccctaactctttccctttgtaa |
241 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8446216 |
acctctattctctattgttctaatc-ttgtccctaactctttccctttgtaa |
8446166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 566 - 626
Target Start/End: Complemental strand, 8445874 - 8445814
Alignment:
| Q |
566 |
ttgtgtgtgctttagtaggcttagagcgccaaatattatagggaggttcagtctgtgctgc |
626 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8445874 |
ttgtgtgtgctttggtaggcttagagcgccaaatattatagggaggttcagtctgtgctgc |
8445814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 491
Target Start/End: Complemental strand, 43062010 - 43061967
Alignment:
| Q |
448 |
ataataattagaaggccaaacacaaaacaataccaaaatctaaa |
491 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
43062010 |
ataataattagaagaccaaccacaaaacaataccaaaatctaaa |
43061967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University