View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14312_high_10 (Length: 338)
Name: NF14312_high_10
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14312_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 49871420 - 49871740
Alignment:
| Q |
1 |
aataatagtaacatggtccctatggttatccagagcaacatactccttatagataccagccttaacatgaataacaaaaggaactttgttcttcttggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871420 |
aataatagtaacatggtccctatggttatccagagcaacatactccttatagataccagccttaacatgaataacaaaaggaactttgttcttcttggga |
49871519 |
T |
|
| Q |
101 |
acagttgcaagtgcctcagtcaaagtcttaaattgaccactaccatcttgtgcaacaacaatgttaggcttaacgttctgaggagccgcaagaagtttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49871520 |
acagttgcaagtgcctcagtcaaagtcttaaattgaccactaccatcttgtgcaacaacaacgttaggcttaacgttctgaggagccgcaagaagtttcc |
49871619 |
T |
|
| Q |
201 |
tttgactttgagaaacccatgatggcaaaccatcttcagacaaaagcttcctattattattcaaaacacttgcaaaagagctcaagttaagatctttcac |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49871620 |
tttgactttgagaaacccatgatggtaaaccatcttcagacaaaagcttcctattattattcaaagcacttgcaaaagagctcaagttaagatctttcac |
49871719 |
T |
|
| Q |
301 |
aaatcctgaaagaccattgat |
321 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
49871720 |
aaatcctgaaagaccattgat |
49871740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 49865489 - 49865809
Alignment:
| Q |
1 |
aataatagtaacatggtccctatggttatccagagcaacatactccttatagataccagccttaacatgaataacaaaaggaactttgttcttcttggga |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
49865489 |
aataatagtaacatggtccctatctttatccacagaaacatactccttatagataccagccttaacatgaataacaaaaggaacttggtttttcttggga |
49865588 |
T |
|
| Q |
101 |
acagttgcaagtgcctcagtcaaagtcttaaattgaccactaccatcttgtgcaacaacaatgttaggcttaacgttctgaggagccgcaagaagtttcc |
200 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| |
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|
| T |
49865589 |
actagtgcaagtgcctcagtcaatgtcttaaattgaccactaccatcttgtgcaacaacagcattaggcttaacgttctcaggagccgcgagaagtttcc |
49865688 |
T |
|
| Q |
201 |
tttgactttgagaaacccatgatggcaaaccatcttcagacaaaagcttcctattattattcaaaacacttgcaaaagagctcaagttaagatctttcac |
300 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
49865689 |
tttggctttgagaaacccatgatggcaaaccatcttcagacaaatgcttcctattattattcaaaacacttgttaaagagctcaagttaagatcttttac |
49865788 |
T |
|
| Q |
301 |
aaatcctgaaagaccattgat |
321 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
49865789 |
aaatcctgaaagtccattgat |
49865809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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