View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14312_high_17 (Length: 303)

Name: NF14312_high_17
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14312_high_17
NF14312_high_17
[»] chr5 (6 HSPs)
chr5 (10-267)||(1504325-1504583)
chr5 (13-218)||(1491565-1491770)
chr5 (13-218)||(1481675-1481880)
chr5 (31-218)||(1477582-1477769)
chr5 (72-218)||(1485470-1485618)
chr5 (32-210)||(1496794-1496972)
[»] chr7 (5 HSPs)
chr7 (35-218)||(5314502-5314685)
chr7 (20-218)||(5309670-5309868)
chr7 (35-218)||(5283860-5284043)
chr7 (35-218)||(5290084-5290267)
chr7 (35-218)||(5302048-5302231)
[»] chr1 (3 HSPs)
chr1 (18-226)||(44128148-44128356)
chr1 (18-226)||(44132353-44132561)
chr1 (18-226)||(44140775-44140983)
[»] chr2 (1 HSPs)
chr2 (47-218)||(24165439-24165610)
[»] chr3 (3 HSPs)
chr3 (104-217)||(37863716-37863829)
chr3 (161-217)||(37859726-37859782)
chr3 (137-217)||(39029611-39029691)


Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 1504325 - 1504583
Alignment:
Q  10 aaaagaaact-actaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgc 108  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |||||    
T  1504325 aaaagaaacttactaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcagagagcagaaggtcctgcaaccattttggccattggcactgc 1504424  T
Q  109 aaatccagcaaattgtgttgaacaaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgc 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1504425 aaatccaccaaattgtgttgaacaaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgc 1504524  T
Q  209 atgtgtaagtgttttttcatattttatcactacatttctaggtaataaaatcaatgttc 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1504525 atgtgtaagtgttttttcatattttatcactacatttctaggtaataaaatcaatgttc 1504583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 1491565 - 1491770
Alignment:
Q  13 agaaactactaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaat 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||| |||| |||||| |||||||||    
T  1491565 agaaactaccaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaat 1491664  T
Q  113 ccagcaaattgtgttgaacaaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgt 212  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||||| |||||||| ||||||||||||||||    
T  1491665 ccagcaaactgtgttgaacaaagcacatatcctgatttttactttaaaatcacaaatagcgaacacaaaactgagctcaaagaaaaatttcaacgcatgt 1491764  T
Q  213 gtaagt 218  Q
    ||||||    
T  1491765 gtaagt 1491770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 1481675 - 1481880
Alignment:
Q  13 agaaactactaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaat 112  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||||||||||| |||| |||||| |||||||||    
T  1481675 agaaactaccaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaat 1481774  T
Q  113 ccagcaaattgtgttgaacaaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgt 212  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || |||   ||||||||||| ||||||||||||||||    
T  1481775 ccagcaaactgtgttgaacaaagcacatatcctgatttttactttaaaatcacaaacagtgagcataaagtcgaactcaaagaaaaatttcaacgcatgt 1481874  T
Q  213 gtaagt 218  Q
    ||||||    
T  1481875 gtaagt 1481880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 1477582 - 1477769
Alignment:
Q  31 caagatggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaatccagcaaattgtgttgaa 130  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||| ||||| |||||  ||| |||||| |||||||||||||| || |||||||||    
T  1477582 caagatggtgagtgtatctgaaattcgcaaggctcagagggcagaaggccctgccaccatcatggccattggcactgcaaatccagccaactgtgttgaa 1477681  T
Q  131 caaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 218  Q
    |||||||||||||||||||| ||||| | ||||||||||||||| ||||||  |||||| ||||| ||||||||||||||||||||||    
T  1477682 caaagcacatatcctgatttttacttcaaaatcacaaacagtgagcacaaagttgaacttaaagaaaaatttcaacgcatgtgtaagt 1477769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 1485470 - 1485618
Alignment:
Q  72 cagaaggtcctgcaaccattttggtcattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctgatttc--tactttagaatcacaaac 169  Q
    ||||||| ||||||| ||| |||| ||| || |||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||| ||||     
T  1485470 cagaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcacatatcctgatttctatacttcagaatcgcaaat 1485569  T
Q  170 agtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 218  Q
    || || ||||| ||  |||||| |||||||||||| ||||| |||||||    
T  1485570 agcgagcacaagacgcaactcagagagaaatttcagcgcatttgtaagt 1485618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 210
Target Start/End: Original strand, 1496794 - 1496972
Alignment:
Q  32 aagatggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaatccagcaaattgtgttgaac 131  Q
    |||||||| | ||||||||||||||| | |||||| |   ||||||| ||| |||| || || |  ||||| |||||||||||| |||||||| ||||||    
T  1496794 aagatggtaactgtatctgaaattcgaagggctcaaagggcagaaggccctacaactatcttagctattggcactgcaaatccaacaaattgtattgaac 1496893  T
Q  132 aaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcat 210  Q
    ||||||||||||||||| |||| || ||| ||||||||| ||| ||||| |||||| | ||| ||||||| || |||||    
T  1496894 aaagcacatatcctgatctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcat 1496972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 5314502 - 5314685
Alignment:
Q  35 atggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaatccagcaaattgtgttgaacaaa 134  Q
    ||||||||||| ||||||||||| |||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5314502 atggtgagtgtgtctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaa 5314601  T
Q  135 gcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 218  Q
    |||||||||||||||| ||||||| ||| ||||| ||||||||||||  ||||||||||||||||||||| |||||||||||||    
T  5314602 gcacatatcctgatttttactttaaaattacaaatagtgaacacaaagttgaactcaaagagaaatttcagcgcatgtgtaagt 5314685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 5309670 - 5309868
Alignment:
Q  20 actaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaatccagcaa 119  Q
    |||||| ||| ||| ||||||||||| ||||||||||| || ||||| | | |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  5309670 actaaagatatcaaaatggtgagtgtgtctgaaattcgtaatgctcaaagagcagaaggtcctgcaactattttggccattggtactgcaaatccagcaa 5309769  T
Q  120 attgtgttgaacaaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 218  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||    
T  5309770 attgtgttgaacaaagcacatatcctgatttttactttaaaatcacaaatagtgaacacaaaactgaacttaaggagaaatttcagcgcatgtgtaagt 5309868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 5283860 - 5284043
Alignment:
Q  35 atggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaatccagcaaattgtgttgaacaaa 134  Q
    ||||||||||| ||||||||||| || ||||| |   ||||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  5283860 atggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggccctgcaaccatcttggccattgggactgcaaatccagcaaattgtgttgaacaaa 5283959  T
Q  135 gcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 218  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  5283960 gcacgtatcctgatttttactttaaaatcacaaacagtgaacacaaaactgaacttaaagagaaatttcagcgcatgtgtaagt 5284043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 5290267 - 5290084
Alignment:
Q  35 atggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaatccagcaaattgtgttgaacaaa 134  Q
    ||||||||||| ||||||||||| || ||||| |   |||||||||||||||| || || | |||||| |||||||||||||||||||||||||||||||    
T  5290267 atggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaa 5290168  T
Q  135 gcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 218  Q
    |||| ||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5290167 gcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagt 5290084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 5302048 - 5302231
Alignment:
Q  35 atggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaatccagcaaattgtgttgaacaaa 134  Q
    ||||||||||| ||||||||||| || ||||| |   |||||||||||||||| || || | |||||| |||||||||||||||||||||||||||||||    
T  5302048 atggtgagtgtgtctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaa 5302147  T
Q  135 gcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 218  Q
    |||| ||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5302148 gcacttatcctgatttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagt 5302231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 44128148 - 44128356
Alignment:
Q  18 ctactaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaatccagc 117  Q
    |||| ||| ||| ||| ||||| ||||| |||||||||||||| ||||| |   ||||||| |||||||||||||| | |||||| |||||||| |||||    
T  44128148 ctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagc 44128247  T
Q  118 aaattgtgttgaacaaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaag 217  Q
     |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  44128248 caattgtgttgaacaaagcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaag 44128347  T
Q  218 tgttttttc 226  Q
    | |||||||    
T  44128348 tattttttc 44128356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 44132353 - 44132561
Alignment:
Q  18 ctactaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaatccagc 117  Q
    |||| ||| ||| ||| ||||| ||||| |||||||||||||| ||||| |   ||||||| |||||||||||||| | |||||| |||||||| |||||    
T  44132353 ctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagc 44132452  T
Q  118 aaattgtgttgaacaaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaag 217  Q
     |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  44132453 caattgtgttgaacaaagcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaag 44132552  T
Q  218 tgttttttc 226  Q
    | |||||||    
T  44132553 tattttttc 44132561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 44140775 - 44140983
Alignment:
Q  18 ctactaaaaataccaagatggtgagtgtatctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaatccagc 117  Q
    |||| ||| ||| ||| ||||| ||||| |||||||||||||| ||||| |   ||||||| |||||||||||||| | |||||| |||||||| |||||    
T  44140775 ctaccaaagatatcaatatggttagtgtgtctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagc 44140874  T
Q  118 aaattgtgttgaacaaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaag 217  Q
     |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  44140875 caattgtgttgaacaaagcacatatcctgatttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaag 44140974  T
Q  218 tgttttttc 226  Q
    | |||||||    
T  44140975 tattttttc 44140983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 24165610 - 24165439
Alignment:
Q  47 tctgaaattcgcaaggctcagaaaacagaaggtcctgcaaccattttggtcattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctg 146  Q
    ||||||||||| |||||||| |   ||||||| |||||||| || |||| |||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  24165610 tctgaaattcgtaaggctcaaagggcagaaggccctgcaactatcttggccattggcactgcaaatccaccaaactgtgttgaacaaagcacatatcctg 24165511  T
Q  147 atttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaagt 218  Q
    |||||||||||||| |||||||||| || ||||| |   |||||||||| |||||||||||||| |||||||    
T  24165510 atttctactttagagtcacaaacagcgagcacaagatcaaactcaaagaaaaatttcaacgcatttgtaagt 24165439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 37863829 - 37863716
Alignment:
Q  104 actgcaaatccagcaaattgtgttgaacaaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttc 203  Q
    |||||||||||   ||| |||||||| || || ||||||||||| || |||||  | ||||||||||||||||||||||||||||||| ||| ||||| |    
T  37863829 actgcaaatcctcaaaactgtgttgatcagagtacatatcctgacttttacttccgtatcacaaacagtgaacacaaaactgaactcagagaaaaattcc 37863730  T
Q  204 aacgcatgtgtaag 217  Q
    | ||||||||||||    
T  37863729 agcgcatgtgtaag 37863716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 37859782 - 37859726
Alignment:
Q  161 atcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaag 217  Q
    ||||||||||||||||| || ||||| |||||||| |||||||| ||||||||||||    
T  37859782 atcacaaacagtgaacataagactgagctcaaagaaaaatttcagcgcatgtgtaag 37859726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 39029611 - 39029691
Alignment:
Q  137 acatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcatgtgtaag 217  Q
    |||||||| || ||||||||  | |||||||| ||||| ||||| || || || ||||| |||||||| ||||||||||||    
T  39029611 acatatccagacttctacttccgcatcacaaatagtgagcacaagacagagctgaaagaaaaatttcagcgcatgtgtaag 39029691  T

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