View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14312_high_18 (Length: 300)

Name: NF14312_high_18
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14312_high_18
NF14312_high_18
[»] chr1 (2 HSPs)
chr1 (5-275)||(17442285-17442553)
chr1 (23-167)||(21545519-21545660)
[»] chr5 (2 HSPs)
chr5 (25-129)||(21943409-21943513)
chr5 (72-119)||(20117121-20117168)
[»] chr7 (4 HSPs)
chr7 (72-167)||(5882036-5882131)
chr7 (80-129)||(8040290-8040339)
chr7 (25-60)||(24578430-24578465)
chr7 (85-130)||(42575233-42575279)
[»] chr4 (3 HSPs)
chr4 (90-155)||(7504292-7504357)
chr4 (21-65)||(3797331-3797375)
chr4 (21-65)||(4216456-4216500)
[»] chr8 (1 HSPs)
chr8 (196-233)||(11154408-11154445)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 275
Target Start/End: Complemental strand, 17442553 - 17442285
Alignment:
Q  5 gtagcataggccttgagtggattagtagaaatgtatatcattaacaactatataatgatttagtgagatataatcataagctcaatgtcttttatattat 104  Q
    |||||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  17442553 gtagcacaggccttaagcgggttagtagaaatgtatatcattaacaactatataatgatttagtga--tataatcataagctcaatgtcttttatattat 17442456  T
Q  105 tttatataatgaaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaattccaaaacaattcttattatataacaaaaacatggt 204  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  17442455 tttatataataaaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaattctaaaacaatttttattatataacaaaaacatggt 17442356  T
Q  205 tcagattatataatccgatcaaatggtatattttagaaagaaacaaaaagtaggacgcttaagaaacacca 275  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17442355 tcatattatataatccgatcaaatagtatattttagaaagaaacaaaaagtaggacgcttaagaaacacca 17442285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 21545519 - 21545660
Alignment:
Q  23 ggattagtagaaatgtatatcattaacaactatataatgatttagtgagatataatcataagctcaatgtcttttatattattttatataatgaaaaatt 122  Q
    |||||||| ||||||||||||||||||||||| |||||||  || |  |||||||| ||||||||  |||||||||||||| |||||| |||||||| ||    
T  21545519 ggattagttgaaatgtatatcattaacaactacataatga--tattttgatataattataagctcgttgtcttttatatta-tttatacaatgaaaattt 21545615  T
Q  123 gttgaatatgcaaagacacgaaattatttcaagcagtttgttgaa 167  Q
    |||||||   || ||||| ||||||| | ||||||||||||||||    
T  21545616 gttgaatccacagagacatgaaattagtgcaagcagtttgttgaa 21545660  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 21943409 - 21943513
Alignment:
Q  25 attagtagaaatgtatatcattaacaactatataatgatttagtgagatataatcataagctcaatgtcttttatattattttatataatgaaaaattgt 124  Q
    |||||| ||||||||||| |||||||| ||||| |||||||  |   ||||||| |||| |||  ||||||||||||||||||||||||| |||| ||||    
T  21943409 attagttgaaatgtatattattaacaaatatattatgattttttttaatataattataaactcgttgtcttttatattattttatataataaaaatttgt 21943508  T
Q  125 tgaat 129  Q
    |||||    
T  21943509 tgaat 21943513  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 20117121 - 20117168
Alignment:
Q  72 atataatcataagctcaatgtcttttatattattttatataatgaaaa 119  Q
    ||||||| |||| |||||| ||||||||||||||||||||| ||||||    
T  20117121 atataattataacctcaatctcttttatattattttatatattgaaaa 20117168  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 5882131 - 5882036
Alignment:
Q  72 atataatcataagctcaatgtcttttatattattttatataatgaaaaattgttgaatatgcaaagacacgaaattatttcaagcagtttgttgaa 167  Q
    ||||||| ||| ||||| |||||||| ||||||||| ||||||||||| |||||||||   |||||| | ||||| | | |||||||| |||||||    
T  5882131 atataattatatgctcattgtcttttgtattattttgtataatgaaaatttgttgaatccacaaagatatgaaatcagtgcaagcagtatgttgaa 5882036  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 8040290 - 8040339
Alignment:
Q  80 ataagctcaatgtcttttatattattttatataatgaaaaattgttgaat 129  Q
    ||||||||| ||||||||||||||||||| ||| | ||||||||||||||    
T  8040290 ataagctcattgtcttttatattattttacatatttaaaaattgttgaat 8040339  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 24578465 - 24578430
Alignment:
Q  25 attagtagaaatgtatatcattaacaactatataat 60  Q
    |||||| |||||||||||||||||||||||||||||    
T  24578465 attagttgaaatgtatatcattaacaactatataat 24578430  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 42575233 - 42575279
Alignment:
Q  85 ctcaatgtcttttatattattttata-taatgaaaaattgttgaata 130  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||    
T  42575233 ctcattgtcttttatattattttatattattgaaaaattgttgaata 42575279  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 7504357 - 7504292
Alignment:
Q  90 tgtcttttatattattttatataatgaaaaattgttgaatatgcaaagacacgaaattatttcaag 155  Q
    ||||||||||| |||||||||||||||||| ||||| |||   |||||||| ||||| ||||||||    
T  7504357 tgtcttttatactattttatataatgaaaatttgttaaatccacaaagacatgaaatcatttcaag 7504292  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 3797331 - 3797375
Alignment:
Q  21 gtggattagtagaaatgtatatcattaacaactatataatgattt 65  Q
    |||||||||| |||||||||||  |||||||||| ||||||||||    
T  3797331 gtggattagttgaaatgtatattgttaacaactacataatgattt 3797375  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 4216456 - 4216500
Alignment:
Q  21 gtggattagtagaaatgtatatcattaacaactatataatgattt 65  Q
    |||||||||| |||||||||||  |||||||||| ||||||||||    
T  4216456 gtggattagttgaaatgtatattgttaacaactacataatgattt 4216500  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 11154408 - 11154445
Alignment:
Q  196 aaacatggttcagattatataatccgatcaaatggtat 233  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  11154408 aaacatggttcagattctataatccgagcaaatggtat 11154445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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