View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14312_high_19 (Length: 287)
Name: NF14312_high_19
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14312_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 64 - 266
Target Start/End: Complemental strand, 18090536 - 18090323
Alignment:
| Q |
64 |
tttcaacttcattcattaagaaagcaaaacagat-------aggaccaaactagggggttctaagaatttccctcccaagtacacgaccccaatgttttg |
156 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18090536 |
tttcaacttcattcgttaagaaagcaaaacagatgaaaagaaggaccaaactagggggttctaagaatttccctcccaagtacacgaccccaatgttttg |
18090437 |
T |
|
| Q |
157 |
gcagcctgagcaa-tctcatt---aacctcattacaacaacgattaataaaaacaacagaaacatcagccgtattggcgtacaaatcttgacagtcccta |
252 |
Q |
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||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18090436 |
gcagccttagcaaatctcatgtgcaacctcattacaacaacgattaataaaaacaacagaaacatcagccatattggcgtacaaatcttgacagtcccta |
18090337 |
T |
|
| Q |
253 |
ataaaaggagttat |
266 |
Q |
| |
|
|||||||||||||| |
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|
| T |
18090336 |
ataaaaggagttat |
18090323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 30143413 - 30143555
Alignment:
| Q |
121 |
gaatttccctcccaagtacacgaccccaatgttttggcagcctgagcaatctcatt---aacctcattacaacaacgattaataaaaacaacagaaacat |
217 |
Q |
| |
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||||||||||||||||||| | ||| || ||||||||||||||||||| ||||| | ||||||||||| ||||| || ||||||||||| |||||| |
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| T |
30143413 |
gaatttccctcccaagtacgagtccctaaagttttggcagcctgagcaagctcatgcgcagcctcattacaataacgactagtaaaaacaacataaacat |
30143512 |
T |
|
| Q |
218 |
cagccgtattggcgtacaaatcttgacagtccctaataaaagg |
260 |
Q |
| |
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||| ||||||| |||||||| |||||||||||||||||||| |
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| T |
30143513 |
aagctatattggcatacaaatcgtgacagtccctaataaaagg |
30143555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18090598 - 18090557
Alignment:
| Q |
1 |
aattactccttagaacaacttaagggtgattttgtattccac |
42 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18090598 |
aattactccttagaacaacttaagggtgattttgtattccac |
18090557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 64 - 266
Target Start/End: Complemental strand, 52758317 - 52758104
Alignment:
| Q |
64 |
tttcaacttcattcattaagaaagcaaaacagat-------aggaccaaactagggggttctaagaatttccctcccaagtacacgaccccaatgttttg |
156 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52758317 |
tttcaacttcattcgttaagaaagcaaaacagatgaaaagaaggaccaaactagggggttctaagaatttccctcccaagtacacgaccccaatgttttg |
52758218 |
T |
|
| Q |
157 |
gcagcctgagcaa-tctcatt---aacctcattacaacaacgattaataaaaacaacagaaacatcagccgtattggcgtacaaatcttgacagtcccta |
252 |
Q |
| |
|
||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
52758217 |
gcagccttagcaaatctcatgtgcaacctcattacaacaacgattaataaaaacaacagaaacatcagccatattggcgtacaaatcttgacagtcccta |
52758118 |
T |
|
| Q |
253 |
ataaaaggagttat |
266 |
Q |
| |
|
|||||||||||||| |
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|
| T |
52758117 |
ataaaaggagttat |
52758104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 23548143 - 23548001
Alignment:
| Q |
121 |
gaatttccctcccaagtacacgaccccaatgttttggcagcctgagcaatctcatt---aacctcattacaacaacgattaataaaaacaacagaaacat |
217 |
Q |
| |
|
||||||||||||||||||| | ||| || ||||||||||||||||||| ||||| | ||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
23548143 |
gaatttccctcccaagtacgagtccctaaagttttggcagcctgagcaagctcatgggcagcctcattacaataacgactaataaaaacaacagaaacat |
23548044 |
T |
|
| Q |
218 |
cagccgtattggcgtacaaatcttgacagtccctaataaaagg |
260 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||||||||||| |
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|
| T |
23548043 |
cagccatattggcatacaaatcgtgacagtccctaataaaagg |
23548001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52758381 - 52758340
Alignment:
| Q |
1 |
aattactccttagaacaacttaagggtgattttgtattccac |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52758381 |
aattactccttagaacaacttaagggtgattttgtattccac |
52758340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 23748975 - 23748833
Alignment:
| Q |
121 |
gaatttccctcccaagtacacgaccccaatgttttggcagcctgagcaatctcatt---aacctcattacaacaacgattaataaaaacaacagaaacat |
217 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| || ||||||||||| ||||| | ||| ||| || |||| ||||||||| ||||||||||| |
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|
| T |
23748975 |
gaattcccctcccaagtacgagaccccaatgtttaggaagcctgagcaagctcatgcgcagccttatttcagacacgactaataaaaaaaacagaaacat |
23748876 |
T |
|
| Q |
218 |
cagccgtattggcgtacaaatcttgacagtccctaataaaagg |
260 |
Q |
| |
|
||||| ||||||| ||||| || |||||||||| ||||||||| |
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| T |
23748875 |
cagccatattggcatacaattcgtgacagtcccgaataaaagg |
23748833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 14245587 - 14245453
Alignment:
| Q |
129 |
ctcccaagtacacgaccccaatgttttggcagcctgagcaatctca---ttaacctcattacaacaacgattaataaaaacaacagaaacatcagccgta |
225 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| | |||| ||||||||| || |||| |||| ||| ||||||||||||| || || |
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|
| T |
14245587 |
ctcccaagtacacgaccccaaagttttgccagcctgagctagctcacgcgcaacctcattgcaggcacgactaatgtaaaaaacagaaacatcaaccata |
14245488 |
T |
|
| Q |
226 |
ttggcgtacaaatcttgacagtccctaataaaagg |
260 |
Q |
| |
|
||||| ||||| || |||||||||| |||| |||| |
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|
| T |
14245487 |
ttggcatacaactcatgacagtcccaaatataagg |
14245453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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