View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14312_high_2 (Length: 720)
Name: NF14312_high_2
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14312_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 1 - 706
Target Start/End: Complemental strand, 45001974 - 45001268
Alignment:
| Q |
1 |
agtgagtgtgtatctcttaatcttagtagaaatagaagaaacaagtagcaattgaagaagaagcag---agagagattccagttccacatattgcaacaa |
97 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
45001974 |
agtgagtgtgtatctcttaatcttagcagaaacagaagaaacaagtagcaattgaagaagaagaagtagagagagattccagttccacatattgcaacag |
45001875 |
T |
|
| Q |
98 |
caaacgatgatgaaatggttggtagaagaagaagcaaccgtttaatgaatacaaaacaaacaagtctgctgcctcactgtcagatgaatatggcgacggt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45001874 |
caaacgatgatgaaatggttggtagaagaagaagcaaccgtttaatgaatacaaaacaaacaagtatgctgcctcactgtcagatgaatatggcgacggt |
45001775 |
T |
|
| Q |
198 |
ggccctgaaagcaccatttcatcaggaagaacgacccgtgcgggtgctttgaaacggtgagtggcgaagcaacaggtggccagc-cgagcgcaatgagaa |
296 |
Q |
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||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
45001774 |
ggcccagaaagcaccatttcatcaggaagaacaacatgcgcgggtgctttgaaacggtgagtggcgaagcaacaggtggccatcgcgagcgcaatgagaa |
45001675 |
T |
|
| Q |
297 |
ggacgacaacggaggagggaggagaatccattgcggcaaagttacagcatgcgaatgcgggggaatgtataaatactgacaacatcgttgcaattcctct |
396 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
45001674 |
ggacgacaatggaggagggaggagaatccattgcggcaaagttacagcatacgaatgcgggggaatgtataaatactgatagcatcgttgcaattcctct |
45001575 |
T |
|
| Q |
397 |
tcattgctaatttgggattctttagtggaagaagaaaagactctatcttcatttcattatttccatttcaaaaaagatggagtacaagtgcacaactgtt |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45001574 |
tcattgctaatttgggattctttagtggaagaagaaaagactctatcttcatttcattatttccatttcaaaaaagatggagtacaagtgcacaattgtt |
45001475 |
T |
|
| Q |
497 |
gtttttgttttgctcttggtatcatagctaccaccaccaaccaccctcatatgtttttgttttaatcaaaagtgggttcatatttctactctattaaaca |
596 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45001474 |
gtttttgttttgctcttggtatcataagtaccaccaccaaccaccctcatatgtttttgttttaatcaaaagtgggttcatatttctactctattaaaca |
45001375 |
T |
|
| Q |
597 |
aattaaaaaagtataagtcaaacaagatannnnnnnnnacaggaaataatgaccatagatatctacttgatgtaattaaatgttgaaatgtgtcacatga |
696 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45001374 |
aattaaaaaagtataagtcaaacaagat---tttttttacaggaaataatgaccatagatatctacttgatgtaattaaatgttggaatgtgtcacatga |
45001278 |
T |
|
| Q |
697 |
ccaaggtttt |
706 |
Q |
| |
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|||||||||| |
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| T |
45001277 |
ccaaggtttt |
45001268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 635 - 706
Target Start/End: Complemental strand, 45009588 - 45009517
Alignment:
| Q |
635 |
acaggaaataatgaccatagatatctacttgatgtaattaaatgttgaaatgtgtcacatgaccaaggtttt |
706 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45009588 |
acaggaaataatgaccatatatatctacttgatgtaattaaatgttgaaatgtgtcacatggccaaggtttt |
45009517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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