View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14312_high_4 (Length: 444)
Name: NF14312_high_4
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14312_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 35686413 - 35685999
Alignment:
| Q |
16 |
gaagaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35686413 |
gaagaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaata |
35686314 |
T |
|
| Q |
116 |
tttgaaatatcataacaagactaattagtacccgaaacaaaa--tatctgcaaatatcattagaaagtgactgagcagactttataatctgatgaagatc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35686313 |
tttgaaatatcataacaagactaattagtacccgaaacaaaaaatatctgcaaatatcattagaaagtgactgagcggactttataatctgatgaagatc |
35686214 |
T |
|
| Q |
214 |
tgtatccatgagttcataaaccaagtagacatccttaaaacttgttctatgcaccggcatcataaatctttcaaaacgatcacattttcatgtcgaatat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35686213 |
tgtatccatgagttcataaaccaagtagacatccttaaaacttgttctatgtaccggcatcataaatctttcaaaacgatcacattttcatgtcgaatat |
35686114 |
T |
|
| Q |
314 |
ttctaagcagcatcatctcccttaaacttctcattgaatcaacacaattatcaaagatgttgctaatcttcttaattgcaactttctcattagtatcctt |
413 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35686113 |
ttctaagcagcatcatctcccttaaagttttcattgaatcaacacaattatcaaagatgttgctaatcttcttaattgcaactttctcattagtatcctt |
35686014 |
T |
|
| Q |
414 |
attgatagatgaaca |
428 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
35686013 |
attgatagatgaaca |
35685999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 136 - 425
Target Start/End: Complemental strand, 35681033 - 35680741
Alignment:
| Q |
136 |
ctaattagtacccgaaacaa--aatatctgcaaatatcattagaaagtgactgagcagactttataatctgatgaagatctgtatccatgagttcataaa |
233 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||| |||||||||||||| ||||| |||||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
35681033 |
ctaattagtacctgaaacaagaaatatttgcaatgatcattagaaagtggctgagtagacttgataatttgatgaagatctgtttccatgagttcataaa |
35680934 |
T |
|
| Q |
234 |
ccaagtagacatccttaaaacttgttctatgcaccggcatcataa-atctttcaaaacgatcacattttcatgtcgaatatttctaagcagcatcatctc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
35680933 |
ccaagtagacatccttaaaacttgttctatgtaccggcatcataacatctttcaaagcaatcacattctcgtgtcgaatatttctaagcagcatcatctc |
35680834 |
T |
|
| Q |
333 |
ccttaaacttctcattgaatcaacacaattatcaaagatgttgctaatcttcttaattgcaactttctcattagtatccttattgatagatga |
425 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
35680833 |
ccttaaagttctcactgaatcaatacaattatcaaatatattgctaatcttcttaattgcaactttctcatcagtatctttattgatggatga |
35680741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 191 - 425
Target Start/End: Original strand, 23669475 - 23669710
Alignment:
| Q |
191 |
gactttataatctgatgaagatctgtatccatgagttcataaaccaagtagacatccttaaaacttgttctatgcaccggcatcataa-atctttcaaaa |
289 |
Q |
| |
|
||||| ||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| || | || ||||||| |||||||| | |
|
|
| T |
23669475 |
gacttgataatacgatgaaggtctttatccatgagttcatagaccaagtagacatccttaaaacttgttctttggtctggtatcataacatctttcagag |
23669574 |
T |
|
| Q |
290 |
cgatcacattttcatgtcgaatatttctaagcagcatcatctcccttaaacttctcattgaatcaacacaattatcaaagatgttgctaatcttcttaat |
389 |
Q |
| |
|
|||||||| ||||| |||| || || ||||| | |||||||||||||| |||| | || |||| |||||| |||||| | ||||||||||||||| || |
|
|
| T |
23669575 |
aaatcacattctcatgccgaacatgtcgaagcaacttcatctcccttaaagttctgagtgcatcaccacaatcatcaaatacgttgctaatcttcttgat |
23669674 |
T |
|
| Q |
390 |
tgcaactttctcattagtatccttattgatagatga |
425 |
Q |
| |
|
||| |||||||| || |||||| ||||||| ||||| |
|
|
| T |
23669675 |
tgccactttctcgttggtatccatattgatggatga |
23669710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 191 - 425
Target Start/End: Original strand, 24041751 - 24041986
Alignment:
| Q |
191 |
gactttataatctgatgaagatctgtatccatgagttcataaaccaagtagacatccttaaaacttgttctatgcaccggcatcataa-atctttcaaaa |
289 |
Q |
| |
|
||||| ||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| || | || ||||||| |||||||| | |
|
|
| T |
24041751 |
gacttgataatacgatgaaggtctttatccatgagttcatagaccaagtagacatccttaaaacttgttctttggtctggtatcataacatctttcagag |
24041850 |
T |
|
| Q |
290 |
cgatcacattttcatgtcgaatatttctaagcagcatcatctcccttaaacttctcattgaatcaacacaattatcaaagatgttgctaatcttcttaat |
389 |
Q |
| |
|
|||||||| ||||| |||| || || ||||| | |||||||||||||| |||| | || |||| |||||| |||||| | ||||||||||||||| || |
|
|
| T |
24041851 |
aaatcacattctcatgccgaacatgtcgaagcaacttcatctcccttaaagttctgagtgcatcaccacaatcatcaaatacgttgctaatcttcttgat |
24041950 |
T |
|
| Q |
390 |
tgcaactttctcattagtatccttattgatagatga |
425 |
Q |
| |
|
||| |||||||| || |||||| ||||||| ||||| |
|
|
| T |
24041951 |
tgccactttctcgttggtatccatattgatggatga |
24041986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 204 - 425
Target Start/End: Original strand, 23685171 - 23685392
Alignment:
| Q |
204 |
gatgaagatctgtatccatgagttcataaaccaagtagacatccttaaaacttgttctatgcaccggcatcataa-atctttcaaaacgatcacattttc |
302 |
Q |
| |
|
||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||| || |||| ||||||| |||||||| | | |||||||| || |
|
|
| T |
23685171 |
gatgaagatctttatccatgaattcatagaccaagtagatatccttaaaacttgttctttggtccggtatcataacatctttcagagcaatcacattctc |
23685270 |
T |
|
| Q |
303 |
atgtcgaatatttctaagcagcatcatctcccttaaacttctcattgaatcaacacaattatcaaagatgttgctaatcttcttaattgcaactttctca |
402 |
Q |
| |
|
||| ||| || |||||||| | |||||||||||||| |||||| || ||| |||||| |||||| | |||||||||||||| ||||| ||||||||| |
|
|
| T |
23685271 |
atgccgac-atgtctaagcaacttcatctcccttaaagttctcagtgcgtcaccacaatcatcaaatacattgctaatcttcttgattgccactttctca |
23685369 |
T |
|
| Q |
403 |
ttagtatccttattgatagatga |
425 |
Q |
| |
|
|| |||||| ||||||| ||||| |
|
|
| T |
23685370 |
ttggtatccatattgatggatga |
23685392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 204 - 425
Target Start/End: Original strand, 24057408 - 24057629
Alignment:
| Q |
204 |
gatgaagatctgtatccatgagttcataaaccaagtagacatccttaaaacttgttctatgcaccggcatcataa-atctttcaaaacgatcacattttc |
302 |
Q |
| |
|
||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||| || |||| ||||||| |||||||| | | |||||||| || |
|
|
| T |
24057408 |
gatgaagatctttatccatgaattcatagaccaagtagatatccttaaaacttgttctttggtccggtatcataacatctttcagagcaatcacattctc |
24057507 |
T |
|
| Q |
303 |
atgtcgaatatttctaagcagcatcatctcccttaaacttctcattgaatcaacacaattatcaaagatgttgctaatcttcttaattgcaactttctca |
402 |
Q |
| |
|
||| ||| || |||||||| | |||||||||||||| |||||| || ||| |||||| |||||| | |||||||||||||| ||||| ||||||||| |
|
|
| T |
24057508 |
atgccgac-atgtctaagcaacttcatctcccttaaagttctcagtgcgtcaccacaatcatcaaatacattgctaatcttcttgattgccactttctca |
24057606 |
T |
|
| Q |
403 |
ttagtatccttattgatagatga |
425 |
Q |
| |
|
|| |||||| ||||||| ||||| |
|
|
| T |
24057607 |
ttggtatccatattgatggatga |
24057629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 23669168 - 23669268
Alignment:
| Q |
16 |
gaagaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaata |
115 |
Q |
| |
|
|||||| ||||||||| |||||||| || |||||| | |||| || |||||||||||||||||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
23669168 |
gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa--acaaggatatgttaaataagcaaata |
23669265 |
T |
|
| Q |
116 |
ttt |
118 |
Q |
| |
|
||| |
|
|
| T |
23669266 |
ttt |
23669268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 24041444 - 24041544
Alignment:
| Q |
16 |
gaagaacatttgcagagtggagatatttgagacctaggagtagctaaaataagagtttatgattagtaacaatcacaaggatatgtaaagtaagcaaata |
115 |
Q |
| |
|
|||||| ||||||||| |||||||| || |||||| | |||| || |||||||||||||||||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
24041444 |
gaagaatatttgcagaatggagataattaagaccttgaagtaactgaaataagagtttatgattagtaacaa--acaaggatatgttaaataagcaaata |
24041541 |
T |
|
| Q |
116 |
ttt |
118 |
Q |
| |
|
||| |
|
|
| T |
24041542 |
ttt |
24041544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 215 - 419
Target Start/End: Original strand, 23674227 - 23674435
Alignment:
| Q |
215 |
gtatccatgagttcataaaccaagtagacatccttaaaac---ttgttctatgcaccggcatcataa-atctttcaaaacgatcacattttcatgtcgaa |
310 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| ||||| | || | | ||||||| |||||||||| ||||||||| || || |||| |
|
|
| T |
23674227 |
gtatccattagttcatagaccaagtagacatccttaaaacatgttgttttttgatctagtatcataacatctttcaaagtgatcacattctcgtgccgaa |
23674326 |
T |
|
| Q |
311 |
tatttctaagcagcatcatctcccttaaacttctcattgaatcaacacaattatcaaagatgttgctaatcttcttaattgcaactttctcattagtatc |
410 |
Q |
| |
|
|| |||||| ||| ||||||||| |||| |||| | || ||||| |||||||||| | |||||||||||||| ||||| ||||||||||| || || |
|
|
| T |
23674327 |
catgtctaagaagcttcatctcccataaagttcttagtgcatcaatcaaattatcaaatacattgctaatcttcttcattgcgactttctcattggtctc |
23674426 |
T |
|
| Q |
411 |
cttattgat |
419 |
Q |
| |
|
|||| |||| |
|
|
| T |
23674427 |
cttactgat |
23674435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 215 - 419
Target Start/End: Original strand, 24046503 - 24046711
Alignment:
| Q |
215 |
gtatccatgagttcataaaccaagtagacatccttaaaac---ttgttctatgcaccggcatcataa-atctttcaaaacgatcacattttcatgtcgaa |
310 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| ||||| | || | | ||||||| |||||||||| ||||||||| || || |||| |
|
|
| T |
24046503 |
gtatccattagttcatagaccaagtagacatccttaaaacatgttgttttttgatctagtatcataacatctttcaaagtgatcacattctcgtgccgaa |
24046602 |
T |
|
| Q |
311 |
tatttctaagcagcatcatctcccttaaacttctcattgaatcaacacaattatcaaagatgttgctaatcttcttaattgcaactttctcattagtatc |
410 |
Q |
| |
|
|| |||||| ||| ||||||||| |||| |||| | || ||||| |||||||||| | |||||||||||||| ||||| ||||||||||| || || |
|
|
| T |
24046603 |
catgtctaagaagcttcatctcccataaagttcttagtgcatcaatcaaattatcaaatacattgctaatcttcttcattgcgactttctcattggtctc |
24046702 |
T |
|
| Q |
411 |
cttattgat |
419 |
Q |
| |
|
|||| |||| |
|
|
| T |
24046703 |
cttactgat |
24046711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 52548711 - 52548627
Alignment:
| Q |
169 |
atcattagaaagtgactgagcagactttataatctgatgaagatctgtatccatgagttcataaaccaagtagacatccttaaaa |
253 |
Q |
| |
|
|||||||||||||| || | |||||| ||||||||||| | ||| || ||||||||||||||||| | || |||||||||||| |
|
|
| T |
52548711 |
atcattagaaagtgcttgggaagacttaataatctgatgcaaatcggtgtccatgagttcataaacaagataaacatccttaaaa |
52548627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University