View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14312_low_1 (Length: 751)
Name: NF14312_low_1
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14312_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 355 - 739
Target Start/End: Complemental strand, 32725161 - 32724771
Alignment:
| Q |
355 |
aaccgttgttgctgctacaatctataaaagggataaaccaacaaaataaatgtgagtacctttaaattcataacnnnnnnnnnnn-ggaacatctatgca |
453 |
Q |
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| T |
32725161 |
aaccgttgttgctgctacaatctataaaagggataaaccaacaaaataaatgtgagtacctttaaattcataacaaaaaaaaaaaaggaacaactatgca |
32725062 |
T |
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| Q |
454 |
attacaataggggcatttaataaaagagcattttgaagtatcaatcctcaaaacaaatgacaatgtgtctaatgaaaatcatgctgtccgcataaaccag |
553 |
Q |
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| T |
32725061 |
attacaataggggcatttaataaaagagcattttgaagtatcaatcctcaaaacaaatgacaatgtgtctaatgaaaatcatgctgtccgcataaaccag |
32724962 |
T |
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| Q |
554 |
taatacgtccaaaaaatactcatcaatttgaacatggaaatagattgaaaactggcaacattagttgaattgttacaaattcactagctgctcctagata |
653 |
Q |
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| T |
32724961 |
taatacgtgcaaaaaatactcatcaatttgaacatggaaatagattgaaaactggcaacattagttcaattgttacaaattcaacagctgctcctagata |
32724862 |
T |
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| Q |
654 |
caataaaacctagacctatattacatagaacatacactagtgaaa-----tgaacactcaaaataataaattaagttgctttttcatctca |
739 |
Q |
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| T |
32724861 |
caataaaacctagacctatattacatagaacatacactagtgaaatgaaatgaacactcaaaataataaattaagttgctttttcatctca |
32724771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 32725999 - 32725843
Alignment:
| Q |
18 |
gtccggaaaatgttaacctcagtcaggtatgattgctcagcattcaagtagttgatggctttggagaagatgaatgaatggcatgccagcagcaagaggt |
117 |
Q |
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| T |
32725999 |
gtccggaaaatgttaaccacagtcaggtatgattgctcagcattcaagtagttgatggctttggagaagatgaacgaatgccatgccagcagcaagaggt |
32725900 |
T |
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| Q |
118 |
tttagattctcaaagtgtttgtatctgtatgtttgatgaagccaaagaattggaagt |
174 |
Q |
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| T |
32725899 |
tttagattctcaaaatgtttgtatctgtatgtttgatgaagccaaagaattggaagt |
32725843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 32725793 - 32725721
Alignment:
| Q |
208 |
taaagtatttgttttataagccagtactcatcatttaactttttaagtcactgcctttgtggagcatgaattc |
280 |
Q |
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| T |
32725793 |
taaagtatttgttttataagccagtactcatcatttaactttttaagtcactgcctttatggagcatgaattc |
32725721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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