View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14312_low_14 (Length: 331)

Name: NF14312_low_14
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14312_low_14
NF14312_low_14
[»] chr5 (4 HSPs)
chr5 (135-318)||(35904724-35904907)
chr5 (1-119)||(35905017-35905135)
chr5 (135-241)||(33618127-33618233)
chr5 (284-327)||(42893406-42893449)
[»] chr7 (5 HSPs)
chr7 (4-76)||(43725251-43725323)
chr7 (154-208)||(43725405-43725459)
chr7 (259-331)||(598250-598322)
chr7 (259-327)||(21880198-21880266)
chr7 (293-327)||(7197276-7197310)
[»] chr6 (4 HSPs)
chr6 (259-324)||(5000560-5000625)
chr6 (274-327)||(24645527-24645580)
chr6 (259-327)||(4877989-4878056)
chr6 (259-327)||(32978844-32978912)
[»] chr4 (3 HSPs)
chr4 (259-328)||(35157930-35157999)
chr4 (1-90)||(37023026-37023115)
chr4 (259-325)||(22234824-22234890)
[»] chr2 (4 HSPs)
chr2 (135-211)||(44831161-44831237)
chr2 (293-327)||(18840992-18841026)
chr2 (259-327)||(2438664-2438732)
chr2 (283-319)||(35449561-35449597)
[»] scaffold0050 (1 HSPs)
scaffold0050 (259-328)||(70323-70392)
[»] scaffold0697 (1 HSPs)
scaffold0697 (284-328)||(1689-1733)
[»] chr1 (5 HSPs)
chr1 (284-328)||(21530734-21530778)
chr1 (293-325)||(43492473-43492505)
chr1 (285-328)||(22907310-22907353)
chr1 (274-327)||(40258893-40258946)
chr1 (255-323)||(5898207-5898275)
[»] chr3 (1 HSPs)
chr3 (259-325)||(25093550-25093616)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 135 - 318
Target Start/End: Complemental strand, 35904907 - 35904724
Alignment:
Q  135 atgcttatggaaatgagaaatggatatgtgatcttgtcacattgattaagaaattgaactccatgcagacaaaaatccttggcgtttgttttggccacca 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35904907 atgcttatggaaatgagaaatggatatgtgatcttgtcacattgattaagaaattgaactccatgcagacaaaaatcattggcgtttgttttggccacca 35904808  T
Q  235 ggtaattaattgttaatttatataaagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgaca 318  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| ||||    
T  35904807 ggtaattaattgttaatttatataaagcacggacacttatcggattaagcgtgtcctagtgtcggacatgtgttgtgtcggaca 35904724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 35905017 - 35905135
Alignment:
Q  1 caacattttcaagaatacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaacgcaccaaatctcttgcaaccaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35905017 caacattttcaagaatacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaacacaccaaatctcttgcaaccaatt 35905116  T
Q  101 ttctccattatcaagtagt 119  Q
    |||||||||||||||||||    
T  35905117 ttctccattatcaagtagt 35905135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 33618127 - 33618233
Alignment:
Q  135 atgcttatggaaatgagaaatggatatgtgatcttgtcacattgattaagaaattgaactccatgcagacaaaaatccttggcgtttgttttggccacca 234  Q
    |||| ||||||||| |||||| ||||||||| |||||||||||||||||| ||||  ||| || ||| ||||||||||||||| || ||||||||||||     
T  33618127 atgcctatggaaataagaaattgatatgtgaccttgtcacattgattaagtaattagacttcaagcacacaaaaatccttggcattggttttggccaccg 33618226  T
Q  235 ggtaatt 241  Q
    |||||||    
T  33618227 ggtaatt 33618233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 327
Target Start/End: Complemental strand, 42893449 - 42893406
Alignment:
Q  284 cgtgttctagtgtcggacatgtgttgtgtctgacaccgacactt 327  Q
    ||||| || |||||||||| ||||||||||||||||||||||||    
T  42893449 cgtgtcctggtgtcggacacgtgttgtgtctgacaccgacactt 42893406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 43725323 - 43725251
Alignment:
Q  4 cattttcaagaatacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaac 76  Q
    |||||||| ||| || ||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  43725323 cattttcaggaacaccccaaaataccctccatacatctttatcacatgctctgaatcctctgcacacaacaac 43725251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 43725405 - 43725459
Alignment:
Q  154 atggatatgtgatcttgtcacattgattaagaaattgaactccatgcagacaaaa 208  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||| ||||||    
T  43725405 atggatatgtgaccttgtcacattgattaagaaattagactccatgcacacaaaa 43725459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 598322 - 598250
Alignment:
Q  259 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacacttacaa 331  Q
    ||||||| |||||| ||||||||  ||||| |  |||||||||| |||| |||||||||||||||||||||||    
T  598322 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaa 598250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 21880266 - 21880198
Alignment:
Q  259 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacactt 327  Q
    ||||||| |||||| ||||||||  ||||| || ||||||||||||||| ||||| |||||||||||||    
T  21880266 aagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacactt 21880198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 7197276 - 7197310
Alignment:
Q  293 gtgtcggacatgtgttgtgtctgacaccgacactt 327  Q
    ||||||||||||||||||||| |||||||||||||    
T  7197276 gtgtcggacatgtgttgtgtccgacaccgacactt 7197310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 5000560 - 5000625
Alignment:
Q  259 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 324  Q
    |||||||||||||  |||||||| |||||| || |||||||| |||||| ||||||||||||||||    
T  5000560 aagcacgaacactcttcggattagacgtgtcctggtgtcggatatgtgtcgtgtctgacaccgaca 5000625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 24645580 - 24645527
Alignment:
Q  274 tcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacactt 327  Q
    |||||||| ||||||  | |||||||||| |||| |||||||||||||||||||    
T  24645580 tcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacaccgacactt 24645527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 327
Target Start/End: Complemental strand, 4878056 - 4877989
Alignment:
Q  259 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacactt 327  Q
    ||||||| |||||  ||||||||  ||||| || ||||||||||||||| ||||| |||||||||||||    
T  4878056 aagcacggacactcctcggattaggcgtgtcct-gtgtcggacatgtgtcgtgtccgacaccgacactt 4877989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 32978844 - 32978912
Alignment:
Q  259 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacactt 327  Q
    ||||||| |||||  | |||||| |||||| |  ||||||||||||||| ||||| |||||||||||||    
T  32978844 aagcacggacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacactt 32978912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 35157930 - 35157999
Alignment:
Q  259 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacactta 328  Q
    ||||||| |||||| ||||||||| |||||||  |||| |||||||||| ||||| ||||||||||||||    
T  35157930 aagcacggacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcagacaccgacactta 35157999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 37023115 - 37023026
Alignment:
Q  1 caacattttcaagaatacaccagaataccctccatgcatctttatcacatactctgaatcctctgcacataacaacgcaccaaatctctt 90  Q
    ||||||| |||  ||||| ||| |||||||||| | ||| ||  ||||||| |||||||| ||||||||||||||| | |||||||||||    
T  37023115 caacattctcacaaataccccaaaataccctccgtacattttcttcacatattctgaatcatctgcacataacaacaccccaaatctctt 37023026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 22234824 - 22234890
Alignment:
Q  259 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacac 325  Q
    |||||||||||||| ||||||||   |||| || |||||||||| |||| ||||| |||||||||||    
T  22234824 aagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacac 22234890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 44831237 - 44831161
Alignment:
Q  135 atgcttatggaaatgagaaatggatatgtgatcttgtcacattgattaagaaattgaactccatgcagacaaaaatc 211  Q
    |||||| ||||||| |||| ||||||||||| ||||||||| |||||||||||||  ||| |||||| |||| ||||    
T  44831237 atgcttgtggaaataagaagtggatatgtgaccttgtcacaatgattaagaaattagactacatgcacacaagaatc 44831161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 18840992 - 18841026
Alignment:
Q  293 gtgtcggacatgtgttgtgtctgacaccgacactt 327  Q
    ||||||||||||||| |||||||||||||||||||    
T  18840992 gtgtcggacatgtgtcgtgtctgacaccgacactt 18841026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 2438664 - 2438732
Alignment:
Q  259 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacactt 327  Q
    ||||||| |||||  ||||||||  ||||| |  ||||||||||||||| ||||| |||||||||||||    
T  2438664 aagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacactt 2438732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 35449597 - 35449561
Alignment:
Q  283 acgtgttctagtgtcggacatgtgttgtgtctgacac 319  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  35449597 acgtgttctggtgtcggacatgtgtcgtgtctgacac 35449561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 70392 - 70323
Alignment:
Q  259 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacactta 328  Q
    ||||||||||||| |||||||||  | ||| || |||||||||| |||| ||||| ||||||||||||||    
T  70392 aagcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacactta 70323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 1733 - 1689
Alignment:
Q  284 cgtgttctagtgtcggacatgtgttgtgtctgacaccgacactta 328  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||    
T  1733 cgtgtcctagtgtcggacatgtgtcgtgtccgacaccgacactta 1689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 21530778 - 21530734
Alignment:
Q  284 cgtgttctagtgtcggacatgtgttgtgtctgacaccgacactta 328  Q
    ||||| |||||||||||||||||| ||||| ||||||||||||||    
T  21530778 cgtgtcctagtgtcggacatgtgtcgtgtccgacaccgacactta 21530734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 43492473 - 43492505
Alignment:
Q  293 gtgtcggacatgtgttgtgtctgacaccgacac 325  Q
    |||||||||||||||||||||||||||||||||    
T  43492473 gtgtcggacatgtgttgtgtctgacaccgacac 43492505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 285 - 328
Target Start/End: Original strand, 22907310 - 22907353
Alignment:
Q  285 gtgttctagtgtcggacatgtgttgtgtctgacaccgacactta 328  Q
    |||| ||||||||||||||||||||||||  |||||||||||||    
T  22907310 gtgtcctagtgtcggacatgtgttgtgtcccacaccgacactta 22907353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 40258893 - 40258946
Alignment:
Q  274 tcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacactt 327  Q
    ||||||||  ||||| || |||||||||| |||| |||||||||||||||||||    
T  40258893 tcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacactt 40258946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 5898207 - 5898275
Alignment:
Q  255 tataaagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgac 323  Q
    ||||||||||| |||||  |||||||| |||||| |  |||| ||||| |||| |||||||||||||||    
T  5898207 tataaagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgac 5898275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 25093616 - 25093550
Alignment:
Q  259 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacac 325  Q
    |||||||||||||  || ||||| | ||| |  |||||||||||||||||||||| |||||||||||    
T  25093616 aagcacgaacactcttcagattagaagtgcttcagtgtcggacatgtgttgtgtccgacaccgacac 25093550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University