View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14312_low_20 (Length: 255)
Name: NF14312_low_20
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14312_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 236
Target Start/End: Complemental strand, 30615529 - 30615299
Alignment:
| Q |
6 |
gatgtcgaagaatataaacaatttggacttttttcaaaggaatttatgtcgcgtcatggtgtacatttgcttggaacaatgtccacatggtttttccttg |
105 |
Q |
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| T |
30615529 |
gatgttgaagaaaataaacaatttggacttttttcaaaggaatttatgtcgcgtcatggtgtacatttgcttggaacaatgtccacatggtttttccttg |
30615430 |
T |
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| Q |
106 |
atgttgtatttcatagtatgaatcttttccaaaaagatgtcttttgtgccgttggttggattcggtatccgaagacaatgaatgcaattgaagaggttta |
205 |
Q |
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| T |
30615429 |
atgttgtatttcatagtatgaatcttttccaaaaagatgtcttttgtaccgttggttggattcggtatccgaagacaatgaatgcaatggaagaggttta |
30615330 |
T |
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| Q |
206 |
tataattgcgagggcgcaaacacttattgct |
236 |
Q |
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| T |
30615329 |
tataattgcgaaggcgcaaacacttattgct |
30615299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 30620268 - 30620054
Alignment:
| Q |
21 |
aaacaatttggacttttttcaaaggaatttatgtcgcgtcatggtgtacatttgcttggaacaatgtccacatggtttttccttgatgttgtatttcata |
120 |
Q |
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| T |
30620268 |
aaacaatttgggcttttttcgaaagagtttatgtcgcgtcacggtttgcatctgcttggaacagcatccacatggtttttgcttgatattgcattttaca |
30620169 |
T |
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| Q |
121 |
gtatgaatcttttccaaaaagatgtcttttgtgccgttggttggattcggtatccgaagacaatgaatgcaattgaagaggtttatataattgcgagggc |
220 |
Q |
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| T |
30620168 |
gtcagaatcttttccaaaaggatatcttcagtgcaattggttggattccgtctgcaaagacgatgaatgcacttgaagaggtttataaaattgcgagggc |
30620069 |
T |
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| Q |
221 |
gcaaacacttattgc |
235 |
Q |
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| T |
30620068 |
gcaaacacttattgc |
30620054 |
T |
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