View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14312_low_21 (Length: 249)

Name: NF14312_low_21
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14312_low_21
NF14312_low_21
[»] chr5 (1 HSPs)
chr5 (18-190)||(42654910-42655082)
[»] chr2 (1 HSPs)
chr2 (118-190)||(5006209-5006281)
[»] chr6 (5 HSPs)
chr6 (108-190)||(28534840-28534922)
chr6 (123-190)||(18605076-18605143)
chr6 (127-183)||(1034803-1034859)
chr6 (123-153)||(10608226-10608256)
chr6 (127-192)||(9428033-9428098)
[»] chr3 (6 HSPs)
chr3 (124-190)||(26837104-26837170)
chr3 (129-190)||(37999539-37999600)
chr3 (18-60)||(37999598-37999640)
chr3 (39-71)||(38741443-38741475)
chr3 (39-71)||(46719841-46719873)
chr3 (123-170)||(46739711-46739758)
[»] scaffold0180 (1 HSPs)
scaffold0180 (86-190)||(22957-23065)
[»] chr8 (4 HSPs)
chr8 (123-183)||(36935713-36935773)
chr8 (123-171)||(30272192-30272240)
chr8 (119-170)||(42573674-42573725)
chr8 (127-183)||(41348226-41348282)
[»] chr4 (5 HSPs)
chr4 (123-183)||(3619080-3619140)
chr4 (123-190)||(52758616-52758683)
chr4 (101-157)||(53289581-53289639)
chr4 (123-189)||(39413528-39413594)
chr4 (39-71)||(52758546-52758578)
[»] scaffold0069 (1 HSPs)
scaffold0069 (119-170)||(1840-1891)
[»] chr1 (2 HSPs)
chr1 (123-190)||(49611466-49611533)
chr1 (18-71)||(49611374-49611428)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 42655082 - 42654910
Alignment:
Q  18 aagtccattggtattgcataatgttgaattaaagaaaagatggagttgtgagatctctgttacagtccagccacaattacaattgaaaaacgcacaaaga 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| |||||||||||  ||||||||||||||||||||| |||||||     
T  42655082 aagtccattggtattgcataatgttga-ttaaagaaaagatggcggtgtgagatctatgttacagtccgaccacaattacaattgaaaaacacacaaagg 42654984  T
Q  118 taggggaagggtggtggtggaagatgatgtg-gaaaaaattaactgttgagagataatggtaaaattttgttcc 190  Q
    ||||||||||||||||||||||||| |||||  |||||| ||| ||||||||||  ||||||||||||||||||    
T  42654983 taggggaagggtggtggtggaagataatgtgaaaaaaaaataagtgttgagagaccatggtaaaattttgttcc 42654910  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 5006209 - 5006281
Alignment:
Q  118 taggggaagggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaattttgttcc 190  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  5006209 taggggaagggtggtggtggaagatgatgtggaaaaaattaagtgttgagagacaatggtaaaattttgttcc 5006281  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 28534922 - 28534840
Alignment:
Q  108 cgcacaaagataggggaagggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaattttgttcc 190  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||||| | ||||||||||  ||||||||||||||||||    
T  28534922 cgcacaaaggtaagggaaggttggtggtggaagatgatgtggaaaaaattgagtgttgagagactatggtaaaattttgttcc 28534840  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 18605143 - 18605076
Alignment:
Q  123 gaagggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaattttgttcc 190  Q
    ||||| ||||| ||||||||||||||||||||||| | ||||||||||  ||| ||||||| ||||||    
T  18605143 gaaggttggtgatggaagatgatgtggaaaaaatttagtgttgagagaccatgataaaattatgttcc 18605076  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 1034859 - 1034803
Alignment:
Q  127 ggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaatt 183  Q
    ||||||||||||||||||||||| |||||||   ||||||||||| ||| |||||||    
T  1034859 ggtggtggtggaagatgatgtgggaaaaatttgatgttgagagatcatgataaaatt 1034803  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 10608226 - 10608256
Alignment:
Q  123 gaagggtggtggtggaagatgatgtggaaaa 153  Q
    |||||||||||||||||||||||||||||||    
T  10608226 gaagggtggtggtggaagatgatgtggaaaa 10608256  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 9428033 - 9428098
Alignment:
Q  127 ggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaattttgttccat 192  Q
    |||||||||||||||||||||||  |||||| | ||||||||||| | | ||||||| ||| ||||    
T  9428033 ggtggtggtggaagatgatgtggggaaaatttaatgttgagagatcacgataaaattatgtaccat 9428098  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 26837104 - 26837170
Alignment:
Q  124 aagggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaattttgttcc 190  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||  ||||||||||||||||||    
T  26837104 aagggtggtggtggaagatgatgtggaaaaaattgagtgttgagagaccatggtaaaattttgttcc 26837170  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 37999600 - 37999539
Alignment:
Q  129 tggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaattttgttcc 190  Q
    ||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||    
T  37999600 tggtggtggaagatgatgtggaaaaaattgagtgttgagagatcatggtaaaattttgttcc 37999539  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 37999640 - 37999598
Alignment:
Q  18 aagtccattggtattgcataatgttgaattaaagaaaagatgg 60  Q
    |||||||||| ||||||||||||||||||||||| ||||||||    
T  37999640 aagtccattgatattgcataatgttgaattaaaggaaagatgg 37999598  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 38741475 - 38741443
Alignment:
Q  39 tgttgaattaaagaaaagatggagttgtgagat 71  Q
    |||||||||||||||||||||||||||||||||    
T  38741475 tgttgaattaaagaaaagatggagttgtgagat 38741443  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 46719873 - 46719841
Alignment:
Q  39 tgttgaattaaagaaaagatggagttgtgagat 71  Q
    |||||||||||||||||||||||||||||||||    
T  46719873 tgttgaattaaagaaaagatggagttgtgagat 46719841  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 46739758 - 46739711
Alignment:
Q  123 gaagggtggtggtggaagatgatgtggaaaaaattaactgttgagaga 170  Q
    ||||||||||||||||||||||||||  ||||||| | ||||||||||    
T  46739758 gaagggtggtggtggaagatgatgtgacaaaaatttagtgttgagaga 46739711  T

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Target: scaffold0180 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 22957 - 23065
Alignment:
Q  86 agccacaattacaattga--aaaacgcacaaagatagggga--agggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaa 181  Q
    ||||||||||||| ||||  ||||||||||||| |||| ||  ||||||||||||||||||||||||  ||||||| | ||||||||||  ||| |||||    
T  22957 agccacaattacagttgaggaaaacgcacaaaggtaggagagaagggtggtggtggaagatgatgtgacaaaaatttagtgttgagagaccatgataaaa 23056  T
Q  182 ttttgttcc 190  Q
    || ||||||    
T  23057 ttatgttcc 23065  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 36935773 - 36935713
Alignment:
Q  123 gaagggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaatt 183  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||| ||| |||||||    
T  36935773 gaagggtggtggtggaagatgatgtggaaaaaatttgatgttgagagatcatgataaaatt 36935713  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 30272240 - 30272192
Alignment:
Q  123 gaagggtggtggtggaagatgatgtggaaaaaattaactgttgagagat 171  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||    
T  30272240 gaagggtggtggtggaagatgatgtggaaaaaatttgatgttgagagat 30272192  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 42573725 - 42573674
Alignment:
Q  119 aggggaagggtggtggtggaagatgatgtggaaaaaattaactgttgagaga 170  Q
    ||||||||||||||||||||||||||||||| ||| ||| | ||||||||||    
T  42573725 aggggaagggtggtggtggaagatgatgtgggaaagatttaatgttgagaga 42573674  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 41348282 - 41348226
Alignment:
Q  127 ggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaatt 183  Q
    ||||||||||||||||||||||| |||||||   ||||||||||  ||| |||||||    
T  41348282 ggtggtggtggaagatgatgtgggaaaaatttgatgttgagagaccatgataaaatt 41348226  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 3619140 - 3619080
Alignment:
Q  123 gaagggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaatt 183  Q
    ||||||||||||||||||||||||||| ||||||| | ||||||||||| ||| |||||||    
T  3619140 gaagggtggtggtggaagatgatgtgggaaaaatttaatgttgagagatcatgataaaatt 3619080  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 52758616 - 52758683
Alignment:
Q  123 gaagggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaattttgttcc 190  Q
    |||| ||||||||||||||||  |||||||| ||| | ||||||||||  ||||||||||| ||||||    
T  52758616 gaagagtggtggtggaagatgtggtggaaaatatttaatgttgagagactatggtaaaattgtgttcc 52758683  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 53289639 - 53289581
Alignment:
Q  101 tgaaaaacgcacaaagataggg--gaagggtggtggtggaagatgatgtggaaaaaatt 157  Q
    |||||||  ||||||| |||||  ||||||||||||||||||||||||||| |||||||    
T  53289639 tgaaaaagacacaaaggtagggaagaagggtggtggtggaagatgatgtgggaaaaatt 53289581  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 39413528 - 39413594
Alignment:
Q  123 gaagggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaattttgttc 189  Q
    ||||| ||||| ||||||||||||||||||||||| | ||| ||||||  ||| ||||||| |||||    
T  39413528 gaaggttggtgatggaagatgatgtggaaaaaatttagtgtcgagagaccatgataaaattatgttc 39413594  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 52758546 - 52758578
Alignment:
Q  39 tgttgaattaaagaaaagatggagttgtgagat 71  Q
    ||||||||||||||||||| |||||||||||||    
T  52758546 tgttgaattaaagaaaagaaggagttgtgagat 52758578  T

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Target: scaffold0069 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 1840 - 1891
Alignment:
Q  119 aggggaagggtggtggtggaagatgatgtggaaaaaattaactgttgagaga 170  Q
    ||||||||||||||||||||||||||||||| ||| ||| | ||||||||||    
T  1840 aggggaagggtggtggtggaagatgatgtgggaaatatttagtgttgagaga 1891  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 49611466 - 49611533
Alignment:
Q  123 gaagggtggtggtggaagatgatgtggaaaaaattaactgttgagagataatggtaaaattttgttcc 190  Q
    |||| ||||||||||||||||  |||||||| ||| | ||||||||||  ||||||||||| ||||||    
T  49611466 gaagagtggtggtggaagatgtggtggaaaatatttagtgttgagagaccatggtaaaattgtgttcc 49611533  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 49611374 - 49611428
Alignment:
Q  18 aagtccattggtattgcataa-tgttgaattaaagaaaagatggagttgtgagat 71  Q
    ||||| ||||||| || |||| |||||||||||||||||||| ||||||||||||    
T  49611374 aagtctattggtactgaataagtgttgaattaaagaaaagatagagttgtgagat 49611428  T

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