View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14312_low_27 (Length: 204)

Name: NF14312_low_27
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14312_low_27
NF14312_low_27
[»] chr3 (3 HSPs)
chr3 (13-204)||(14338474-14338668)
chr3 (144-194)||(49179716-49179768)
chr3 (164-204)||(26492196-26492236)
[»] chr2 (12 HSPs)
chr2 (144-202)||(43585998-43586058)
chr2 (143-200)||(37491850-37491909)
chr2 (166-204)||(5040764-5040802)
chr2 (146-204)||(24067758-24067818)
chr2 (144-194)||(33884057-33884109)
chr2 (164-204)||(15972901-15972941)
chr2 (173-204)||(18841004-18841035)
chr2 (166-204)||(2438710-2438748)
chr2 (145-188)||(37211892-37211937)
chr2 (170-202)||(12224257-12224289)
chr2 (144-189)||(13501084-13501131)
chr2 (166-194)||(37559007-37559035)
[»] chr4 (6 HSPs)
chr4 (144-204)||(13307883-13307945)
chr4 (144-204)||(44362672-44362734)
chr4 (145-200)||(13117436-13117493)
chr4 (151-193)||(37496717-37496761)
chr4 (166-202)||(12797331-12797367)
chr4 (166-202)||(16073424-16073460)
[»] chr6 (12 HSPs)
chr6 (144-199)||(6751878-6751935)
chr6 (144-194)||(19369823-19369875)
chr6 (156-204)||(30851620-30851668)
chr6 (152-204)||(28715309-28715363)
chr6 (144-187)||(10031576-10031621)
chr6 (164-194)||(15489733-15489763)
chr6 (139-194)||(22745958-22746015)
chr6 (166-204)||(28152128-28152166)
chr6 (166-204)||(34595164-34595202)
chr6 (146-204)||(7377987-7378047)
chr6 (168-204)||(16833340-16833376)
chr6 (166-202)||(27904029-27904065)
[»] scaffold0314 (1 HSPs)
scaffold0314 (144-195)||(8954-9007)
[»] chr7 (9 HSPs)
chr7 (143-188)||(10702551-10702597)
chr7 (144-194)||(1885579-1885631)
chr7 (144-194)||(5937422-5937474)
chr7 (152-204)||(21880166-21880220)
chr7 (166-200)||(7197292-7197326)
chr7 (166-204)||(33994242-33994280)
chr7 (166-195)||(7438736-7438765)
chr7 (158-194)||(25822677-25822713)
chr7 (166-202)||(25956475-25956511)
[»] chr1 (4 HSPs)
chr1 (166-204)||(38078652-38078690)
chr1 (166-204)||(40258924-40258962)
chr1 (166-204)||(1815287-1815325)
chr1 (166-204)||(51410055-51410093)
[»] chr5 (6 HSPs)
chr5 (144-189)||(15302531-15302576)
chr5 (143-193)||(30080503-30080555)
chr5 (164-200)||(19167571-19167607)
chr5 (166-204)||(15884018-15884056)
chr5 (166-194)||(8420057-8420085)
chr5 (147-200)||(16207586-16207641)
[»] scaffold0083 (1 HSPs)
scaffold0083 (166-204)||(45521-45559)
[»] chr8 (7 HSPs)
chr8 (144-195)||(27733853-27733906)
chr8 (166-204)||(31557026-31557064)
chr8 (144-194)||(24295138-24295190)
chr8 (144-177)||(25104613-25104646)
chr8 (166-202)||(4948682-4948718)
chr8 (144-189)||(26915246-26915293)
chr8 (148-189)||(31119097-31119140)
[»] scaffold0652 (1 HSPs)
scaffold0652 (166-203)||(454-491)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 14338668 - 14338474
Alignment:
Q  13 gagatgaatgggctggaacctttgaaggtattgtacaaacaaggacagaacccagaactgattgcccaggttagttgctcatttctttgaagcacgaaca 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14338668 gagatgaatgggctggaacctttgaaggtattgtacaaataaggacagaacccagaactgattgcccaggttagttgctcacttctttgaagcacgaaca 14338569  T
Q  113 cacacacggacacc-gataacgacacagacatgataaaattttgagaaaatgac--aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    || ||||||||||| || |  |||||||||| ||||||||||||| ||||||||  ||||||||||||| |||| ||||||||||||||||||||    
T  14338568 catacacggacaccggacacagacacagacacgataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgtcagacacgaca 14338474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 49179768 - 49179716
Alignment:
Q  144 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtc 194  Q
    ||||||||||||||||| |||||  |||| ||||||| |||||||||||||||    
T  49179768 gataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggtgtc 49179716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 26492236 - 26492196
Alignment:
Q  164 acaattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||||| ||||||||||||| |||||||| |||||||||    
T  26492236 acaattcagtgtaattacaagtatcggtgtcggacacgaca 26492196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 43586058 - 43585998
Alignment:
Q  144 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacga 202  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||| |||||||    
T  43586058 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacacga 43585998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 37491909 - 37491850
Alignment:
Q  143 tgataaaattttgagaaaatgac--aattcaatgtaattacaagtgtcggtgtcagacac 200  Q
    |||||||||||||||||||| ||  ||||||||||||||| | |||||||||||||||||    
T  37491909 tgataaaattttgagaaaataacttaattcaatgtaattaaatgtgtcggtgtcagacac 37491850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 5040764 - 5040802
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  5040764 aattcaatgtaattacaagtgtcggtgtcggacacgaca 5040802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 24067758 - 24067818
Alignment:
Q  146 taaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||||||||||||||| ||  ||| |||| ||| |||||||||||||||||||||||||    
T  24067758 taaaattttgagaaaatgtcataattaaatgaaatcacaagtgtcggtgtcagacacgaca 24067818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 33884057 - 33884109
Alignment:
Q  144 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtc 194  Q
    ||||||||| |||||||||||||  ||||| ||||||||||||||||||||||    
T  33884057 gataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtcggtgtc 33884109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 15972901 - 15972941
Alignment:
Q  164 acaattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  15972901 acaattcagtgtaattacaagtgtcggtgtcggacacgaca 15972941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 173 - 204
Target Start/End: Complemental strand, 18841035 - 18841004
Alignment:
Q  173 tgtaattacaagtgtcggtgtcagacacgaca 204  Q
    ||||||||||||||||||||||||||||||||    
T  18841035 tgtaattacaagtgtcggtgtcagacacgaca 18841004  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 2438748 - 2438710
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  2438748 aattcagtgtaattacaagtgtcggtgtcggacacgaca 2438710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 37211937 - 37211892
Alignment:
Q  145 ataaaattttgagaaaatgaca--attcaatgtaattacaagtgtc 188  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||    
T  37211937 ataaaatttcgagaaaatgacacaattcaatgtaattacaagtgtc 37211892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 12224257 - 12224289
Alignment:
Q  170 caatgtaattacaagtgtcggtgtcagacacga 202  Q
    ||||||||||||||||||||||||| |||||||    
T  12224257 caatgtaattacaagtgtcggtgtcggacacga 12224289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 13501131 - 13501084
Alignment:
Q  144 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcg 189  Q
    ||||||||||| |||||||||||  |||||||||||| ||||||||||    
T  13501131 gataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 37559007 - 37559035
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtc 194  Q
    |||||||||||||||||||||||||||||    
T  37559007 aattcaatgtaattacaagtgtcggtgtc 37559035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 13307883 - 13307945
Alignment:
Q  144 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| |||||| |||||||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcggacacgaca 13307945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 44362672 - 44362734
Alignment:
Q  144 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||||||||||||||||||||  ||| |||||||| |||||||| ||||||||||||||||    
T  44362672 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgaca 44362734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 13117436 - 13117493
Alignment:
Q  145 ataaaattttgagaaaatgacaa--ttcaatgtaattacaagtgtcggtgtcagacac 200  Q
    ||||||||| |||||||||||||  ||||||||||| ||||||||||||||| |||||    
T  13117436 ataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggtgtcggacac 13117493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 37496717 - 37496761
Alignment:
Q  151 ttttgagaaaatgaca--attcaatgtaattacaagtgtcggtgt 193  Q
    ||||||||||||||||  |||||||||||| ||||||||||||||    
T  37496717 ttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 37496761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 12797367 - 12797331
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacga 202  Q
    |||||| |||||||||||||||||||||| |||||||    
T  12797367 aattcagtgtaattacaagtgtcggtgtcggacacga 12797331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 16073424 - 16073460
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacga 202  Q
    |||||| |||||||||||||||||||||| |||||||    
T  16073424 aattcagtgtaattacaagtgtcggtgtcggacacga 16073460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 6751935 - 6751878
Alignment:
Q  144 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagaca 199  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||| ||||    
T  6751935 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcggaca 6751878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 19369823 - 19369875
Alignment:
Q  144 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtc 194  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||||||||    
T  19369823 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtc 19369875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 30851620 - 30851668
Alignment:
Q  156 agaaaatgacaattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    ||||||| ||||||||||||||||| | ||||||||||| |||||||||    
T  30851620 agaaaatcacaattcaatgtaattatatgtgtcggtgtcggacacgaca 30851668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 28715309 - 28715363
Alignment:
Q  152 tttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    ||||| |||||||||  ||||| |||||||||||||||||||||| |||||||||    
T  28715309 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgaca 28715363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 10031576 - 10031621
Alignment:
Q  144 gataaaattttgagaaaatgac--aattcaatgtaattacaagtgt 187  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||    
T  10031576 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 194
Target Start/End: Complemental strand, 15489763 - 15489733
Alignment:
Q  164 acaattcaatgtaattacaagtgtcggtgtc 194  Q
    |||||||||||||||||||||||||||||||    
T  15489763 acaattcaatgtaattacaagtgtcggtgtc 15489733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 22745958 - 22746015
Alignment:
Q  139 gacatgataaaattttgagaaaatg--acaattcaatgtaattacaagtgtcggtgtc 194  Q
    |||| ||||||||||||||||||||  | | ||||||||||| |||||||||||||||    
T  22745958 gacacgataaaattttgagaaaatgttatatttcaatgtaatcacaagtgtcggtgtc 22746015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 28152128 - 28152166
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  28152128 aattcagtgtaattacaagtgtcggtgtcggacacgaca 28152166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 34595164 - 34595202
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  34595164 aattcagtgtaattacaagtgtcggtgtcggacacgaca 34595202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 7377987 - 7378047
Alignment:
Q  146 taaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    ||||| ||||||||||| |||  |||||||||||||| | ||||||||||| |||||||||    
T  7377987 taaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgaca 7378047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 16833340 - 16833376
Alignment:
Q  168 ttcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  16833340 ttcagtgtaattacaagtgtcggtgttagacacgaca 16833376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 27904065 - 27904029
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacga 202  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  27904065 aattcagtgtaattacaaatgtcggtgtcagacacga 27904029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 8954 - 9007
Alignment:
Q  144 gataaaattttgagaaaatgac--aattcaatgtaattacaagtgtcggtgtca 195  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||||||||    
T  8954 gataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggtgtca 9007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 10702597 - 10702551
Alignment:
Q  143 tgataaaattttgagaaaatgaca-attcaatgtaattacaagtgtc 188  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||    
T  10702597 tgataaaattttgagaaaatgacatattcaatgtaattataagtgtc 10702551  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 1885579 - 1885631
Alignment:
Q  144 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtc 194  Q
    ||||||||||||| |||||||||  |||||||||||| |||||||||||||||    
T  1885579 gataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtc 1885631  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 5937474 - 5937422
Alignment:
Q  144 gataaaattttgagaaaatgac--aattcaatgtaattacaagtgtcggtgtc 194  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||| |||||    
T  5937474 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgtc 5937422  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 21880166 - 21880220
Alignment:
Q  152 tttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    ||||||||||| |||  ||||| |||||||||||||||||||||| |||||||||    
T  21880166 tttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgaca 21880220  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 7197326 - 7197292
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacac 200  Q
    ||||||||||||||||||||||||||||| |||||    
T  7197326 aattcaatgtaattacaagtgtcggtgtcggacac 7197292  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 33994242 - 33994280
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||| || |||||||||||||||||||||||||||||    
T  33994242 aattcagtgcaattacaagtgtcggtgtcagacacgaca 33994280  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 7438736 - 7438765
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtca 195  Q
    ||||||||||||||||||||||||||||||    
T  7438736 aattcaatgtaattacaagtgtcggtgtca 7438765  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 25822677 - 25822713
Alignment:
Q  158 aaaatgacaattcaatgtaattacaagtgtcggtgtc 194  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  25822677 aaaatcacaattcagtgtaattacaagtgtcggtgtc 25822713  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 25956475 - 25956511
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacga 202  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  25956475 aattcaatgtaatcacaagtgtcggtgtcggacacga 25956511  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 38078690 - 38078652
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  38078690 aattcaatgtaattacaagtgtcggtgtcggacacgaca 38078652  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 40258962 - 40258924
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  40258962 aattcagtgtaattacaagtgtcggtgtcagacacgaca 40258924  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 1815287 - 1815325
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  1815287 aattcagtgtaattacaagtgtcggtgtccgacacgaca 1815325  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 51410055 - 51410093
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  51410055 aattcagtgtaattacaagtgtcggtgtcggacacgaca 51410093  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 15302531 - 15302576
Alignment:
Q  144 gataaaattttgagaaaatgacaattcaatgtaattacaagtgtcg 189  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  15302531 gataaaattttgaaaaaatgacaattcaaggtaatcacaagtgtcg 15302576  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 30080555 - 30080503
Alignment:
Q  143 tgataaaattttgagaaaatgac--aattcaatgtaattacaagtgtcggtgt 193  Q
    |||||||||||||||||||||||  ||||||||||||| |||||| |||||||    
T  30080555 tgataaaattttgagaaaatgacataattcaatgtaatcacaagtatcggtgt 30080503  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 19167607 - 19167571
Alignment:
Q  164 acaattcaatgtaattacaagtgtcggtgtcagacac 200  Q
    ||||||||||||||| |||||||||||||||||||||    
T  19167607 acaattcaatgtaatcacaagtgtcggtgtcagacac 19167571  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 15884018 - 15884056
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  15884018 aattcagtgtaattacaagtgtcggtgtcggacacgaca 15884056  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 8420057 - 8420085
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtc 194  Q
    |||||||||||||||||||||||||||||    
T  8420057 aattcaatgtaattacaagtgtcggtgtc 8420085  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 16207641 - 16207586
Alignment:
Q  147 aaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacac 200  Q
    ||||||| |||||| |||||  |||||||||||| |||||||| ||||||||||||    
T  16207641 aaaatttagagaaattgacataattcaatgtaatcacaagtgttggtgtcagacac 16207586  T

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Target: scaffold0083 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 45559 - 45521
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  45559 aattcagtgtaattacaagtgtcggtgtcggacacgaca 45521  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 195
Target Start/End: Original strand, 27733853 - 27733906
Alignment:
Q  144 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtca 195  Q
    ||||||||||||||||||||| |  |||||||||||| |||||||| |||||||    
T  27733853 gataaaattttgagaaaatgatataattcaatgtaatcacaagtgttggtgtca 27733906  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 31557026 - 31557064
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgaca 204  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  31557026 aattcagtgtaattacaagtttcggtgtcagacacgaca 31557064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 24295190 - 24295138
Alignment:
Q  144 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtc 194  Q
    ||||||||| |||||||||||||  ||| |||||||| |||||||||||||||    
T  24295190 gataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcggtgtc 24295138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 25104646 - 25104613
Alignment:
Q  144 gataaaattttgagaaaatgacaattcaatgtaa 177  Q
    ||||||||||||| ||||||||||||||||||||    
T  25104646 gataaaattttgacaaaatgacaattcaatgtaa 25104613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 4948682 - 4948718
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacga 202  Q
    |||||| |||||||||||||||||||||| |||||||    
T  4948682 aattcagtgtaattacaagtgtcggtgtcggacacga 4948718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 26915293 - 26915246
Alignment:
Q  144 gataaaattttgagaaaatgac--aattcaatgtaattacaagtgtcg 189  Q
    ||||||||||||||||||||||  |||| |||||||| ||||||||||    
T  26915293 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 31119097 - 31119140
Alignment:
Q  148 aaattttgagaaaatgaca--attcaatgtaattacaagtgtcg 189  Q
    |||||||||||||||||||  |||||||||||| ||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 31119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 491 - 454
Alignment:
Q  166 aattcaatgtaattacaagtgtcggtgtcagacacgac 203  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  491 aattcagtgtaattacaagtgtcggtgtcggacacgac 454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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