View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14312_low_28 (Length: 201)
Name: NF14312_low_28
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14312_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 12522392 - 12522565
Alignment:
| Q |
12 |
agagatgaagacagtcgagggaacaattgagctcaaaagaatcaatttcagctacccttcaaggccagatgttattattttcaaggattttagtctaaga |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12522392 |
agagttgaagacagtcgagggaacaattgagctcaaaagaatcaatttcagctacccttcaaggccagatgttattattttcaaggattttagtctaaga |
12522491 |
T |
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| Q |
112 |
gttccttcaggcaaaagtgttgccttagtgggacaaagtggttctggtaaaagctctgtgatctcacttatact |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12522492 |
gttccttcaggcaaaagtgttgccttagtgggacaaagtggttctggtaaaagctctgtgatctcacttatact |
12522565 |
T |
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Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 27730511 - 27730684
Alignment:
| Q |
12 |
agagatgaagacagtcgagggaacaattgagctcaaaagaatcaatttcagctacccttcaaggccagatgttattattttcaaggattttagtctaaga |
111 |
Q |
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|||| ||| |||||| || |||| |||||||| ||||| |||||||| | ||| |||||||| ||| |||| ||||||| |||||||| | ||||| | |
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| T |
27730511 |
agagttgatgacagtggaaggaatgattgagctaaaaaggatcaattttatctatccttcaagaccaaatgtcgttatttttaaggatttcaatctaata |
27730610 |
T |
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| Q |
112 |
gttccttcaggcaaaagtgttgccttagtgggacaaagtggttctggtaaaagctctgtgatctcacttatact |
185 |
Q |
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|| |||||||| || ||| ||||||| || || || |||||||||||||||||||| | ||||| |||||||| |
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| T |
27730611 |
gtgccttcagggaagagtcttgccttggtagggcacagtggttctggtaaaagctcaataatctcccttatact |
27730684 |
T |
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