View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14312_low_3 (Length: 556)
Name: NF14312_low_3
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14312_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 25 - 538
Target Start/End: Complemental strand, 6228260 - 6227758
Alignment:
| Q |
25 |
atagaaaagatagtattgtaatgggaaaatgactagagagaggagagatagatatgcatctaaccttagctagatatatggtcctcaatgctgcagaatc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6228260 |
atagaaaagatagtattgtaatgggaaaatgactagagagaggagagatagatatgcatctaaccttagctagatatatggtcctcaatgctgcagaatc |
6228161 |
T |
|
| Q |
125 |
aaatgnnnnnnnnnnnnntacataagtcacgcctagttaactcatattgaattggtggtgacttcagtccaaagtttatgtcattataaaccgacatgca |
224 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6228160 |
aaatgaaaaattaaaaaatacataagtcacgcctagttaactcatattgaattggtggtgacttcagtccaaagtttatgtcattataaaccgacatgca |
6228061 |
T |
|
| Q |
225 |
cctttctatttttagattttttaagttctaagtgtttaagggatgcatcatgct-aaaacatagtcataaagtcaaaaatacccattaacatttgttata |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6228060 |
cctttctatttttagattttttaagttctaagtgtttaaggggtgcatcatgctaaaaaaaaagtcataaagtcaaaaatactcattaacatttgttata |
6227961 |
T |
|
| Q |
324 |
ttaatttctttaactaatatcttaaaaacactcattaccannnnnnnnaaaatggtgttatttgactattatacaattgataacgtgtattgaca--cta |
421 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
6227960 |
ttaatttctttaattaatatcttaaaaacactaattaccatttttttt-aaatggtgttatttaactattacacaattgataacgtatattgacactcta |
6227862 |
T |
|
| Q |
422 |
ttaaaatgtcattgtataaaattattgatgtgatttgaagaggaaaaaacactagtttatnnnnnnnnnnngtataattatatcaacaccgtatatgcac |
521 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||| |
|
|
| T |
6227861 |
ttaaaatgtcattg-----------tgatgtgatttgaagaggaaaaaacattaatttataaaaaaaata--tataattatatcaacaccgtatatacac |
6227775 |
T |
|
| Q |
522 |
acattgttggacaacaa |
538 |
Q |
| |
|
||||||| | ||||||| |
|
|
| T |
6227774 |
acattgtcgaacaacaa |
6227758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University