View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14312_low_5 (Length: 406)

Name: NF14312_low_5
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14312_low_5
NF14312_low_5
[»] chr3 (2 HSPs)
chr3 (1-404)||(14338086-14338493)
chr3 (365-405)||(40993306-40993346)
[»] chr2 (3 HSPs)
chr2 (365-406)||(18840984-18841025)
chr2 (365-406)||(2438690-2438731)
chr2 (362-406)||(28596516-28596560)
[»] chr6 (3 HSPs)
chr6 (241-303)||(28077215-28077277)
chr6 (365-406)||(32978870-32978911)
chr6 (373-405)||(18367895-18367927)
[»] chr5 (2 HSPs)
chr5 (253-303)||(22976404-22976454)
chr5 (253-299)||(33695359-33695405)
[»] chr8 (4 HSPs)
chr8 (365-402)||(31557047-31557084)
chr8 (365-405)||(33405355-33405395)
chr8 (365-405)||(44462166-44462206)
chr8 (365-405)||(44469699-44469739)
[»] chr7 (2 HSPs)
chr7 (365-406)||(598255-598296)
chr7 (365-406)||(21880199-21880240)
[»] chr1 (3 HSPs)
chr1 (365-406)||(1815304-1815345)
chr1 (365-406)||(40258904-40258945)
chr1 (241-301)||(33152696-33152756)
[»] chr4 (1 HSPs)
chr4 (365-405)||(30982838-30982878)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 14338086 - 14338493
Alignment:
Q  1 ctgttctgcaccaaactaccgatatccagaatcagcgaagagcgaaacatgatcgaaagatattgttagcaagatttaattcatacatacggcaaatgtg 100  Q
    ||||||||||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||     
T  14338086 ctgttctgcaccaaagtaccgatatcaagaatcagcgaagagcaaaacatgttcgaaagatattgttagaaagatttaattcatacatacggcaaatgta 14338185  T
Q  101 aagagtgtatatactgtcaattaattataaccttcaaaatattataaacgtttgaattctatcattaccacttctgaagtcagacacatgattggttatg 200  Q
    |||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14338186 aagagtttgtatactgtcaattaattataaccgtcaaattattataaacgtttgaattctatcattaccacttctgaagtcagacacatgattggttatg 14338285  T
Q  201 ctatataatttacttatttaatgctttgagaattgattttggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggata 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||||| |||||||||||||| |||| ||||||||||||    
T  14338286 ctatataatttacttatttaatgctttgagaattgattttggttctgtttggtaaatatagcggataattgataagctacctgatagcttatagcggata 14338385  T
Q  301 gctaataagctagctgatggccttaccaaacagagcccttaa----ttgttgaagcaaaacttttggagtgtccgggtgtccgacatgtgtcgtgtctga 396  Q
    ||| ||||||||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||||||| ||||||||| | |||||||||||||    
T  14338386 gctgataagctagctgatggccttaccaaacagagcccttaactgtttgttgaaggaaaacttttggagtgtcccggtgtccgatacgtgtcgtgtctga 14338485  T
Q  397 caccgaca 404  Q
    ||||||||    
T  14338486 caccgaca 14338493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 40993306 - 40993346
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 405  Q
    |||||| |||||| ||||||||||||||| |||||||||||    
T  40993306 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacac 40993346  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 18840984 - 18841025
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacact 406  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  18840984 gtgtcccggtgtcggacatgtgtcgtgtctgacaccgacact 18841025  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 2438690 - 2438731
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacact 406  Q
    |||||| |||||| ||||||||||||||| ||||||||||||    
T  2438690 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacact 2438731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 28596560 - 28596516
Alignment:
Q  362 ggagtgtccgggtgtccgacatgtgtcgtgtctgacaccgacact 406  Q
    |||||||||| ||||| |||| |||||||||| ||||||||||||    
T  28596560 ggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacact 28596516  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 303
Target Start/End: Complemental strand, 28077277 - 28077215
Alignment:
Q  241 ggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatagct 303  Q
    ||||||||| | |||| |||| |||||||| ||||||||||| |||| ||||||| |||||||    
T  28077277 ggctctgtttggtaaaaatagcggatagtttataagctacctgatagcttatagctgatagct 28077215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 32978870 - 32978911
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacact 406  Q
    |||||| |||||| ||||||||||||||| ||||||||||||    
T  32978870 gtgtcccggtgtcggacatgtgtcgtgtccgacaccgacact 32978911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 18367927 - 18367895
Alignment:
Q  373 gtgtccgacatgtgtcgtgtctgacaccgacac 405  Q
    ||||| |||||||||||||||||||||||||||    
T  18367927 gtgtcagacatgtgtcgtgtctgacaccgacac 18367895  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 22976404 - 22976454
Alignment:
Q  253 taaatatagtggatagttgataagctaccttatagtttatagcggatagct 303  Q
    |||| |||| |||||| |||||||||| ||||||||||||||| |||||||    
T  22976404 taaaaatagcggatagctgataagctagcttatagtttatagctgatagct 22976454  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 33695405 - 33695359
Alignment:
Q  253 taaatatagtggatagttgataagctaccttatagtttatagcggat 299  Q
    |||| |||| ||||||||||||||||| || ||||||||||||||||    
T  33695405 taaaaatagcggatagttgataagctagctgatagtttatagcggat 33695359  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 31557084 - 31557047
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccga 402  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  31557084 gtgtcctggtgtcggacatgtgtcgtgtctgacaccga 31557047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 33405355 - 33405395
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 405  Q
    |||||| |||||| ||||||||||||||| |||||||||||    
T  33405355 gtgtccaggtgtcagacatgtgtcgtgtccgacaccgacac 33405395  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 44462166 - 44462206
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 405  Q
    |||||| |||||| ||||||| |||||||||||||||||||    
T  44462166 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacac 44462206  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 44469699 - 44469739
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 405  Q
    |||||| |||||| ||||||| |||||||||||||||||||    
T  44469699 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacac 44469739  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 598296 - 598255
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacact 406  Q
    |||||| |||||| |||| |||||||||||||||||||||||    
T  598296 gtgtcccggtgtcggacacgtgtcgtgtctgacaccgacact 598255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 21880240 - 21880199
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacact 406  Q
    |||||| |||||| ||||||||||||||| ||||||||||||    
T  21880240 gtgtcctggtgtcggacatgtgtcgtgtccgacaccgacact 21880199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 1815345 - 1815304
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacact 406  Q
    |||||| |||||| ||||||||||||||| ||||||||||||    
T  1815345 gtgtcccggtgtcggacatgtgtcgtgtcggacaccgacact 1815304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 40258904 - 40258945
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacact 406  Q
    |||||| |||||| |||| |||||||||||||||||||||||    
T  40258904 gtgtcctggtgtcggacaggtgtcgtgtctgacaccgacact 40258945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 33152756 - 33152696
Alignment:
Q  241 ggctctgttagataaatatagtggatagttgataagctaccttatagtttatagcggatag 301  Q
    |||||| || |||||| |||| |||||| |||||||||| || |||||||||||| |||||    
T  33152756 ggctctatttgataaaaatagcggatagctgataagctagctgatagtttatagctgatag 33152696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 30982838 - 30982878
Alignment:
Q  365 gtgtccgggtgtccgacatgtgtcgtgtctgacaccgacac 405  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  30982838 gtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 30982878  T

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