View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14312_low_7 (Length: 354)
Name: NF14312_low_7
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14312_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 37407891 - 37407585
Alignment:
| Q |
13 |
attctacttaaaatatctatgccattatgcttagttttgtgttttagttgtttcttttacgttccaaattagctagtaaaatcaaagcataccaaaacaa |
112 |
Q |
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| T |
37407891 |
attctacttaaaatatctatgccattatgcttagttttgtgttttagttgtttcttttacgttccaaattagctaataaaatcaaagcataccaaaacaa |
37407792 |
T |
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| Q |
113 |
aaggcagaatttcaaatgcacnnnnnnnctgtgtgcaagtattaatgtttaataacaatagtttataagtggaggttttcggtttagcttctgatcaatg |
212 |
Q |
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| T |
37407791 |
aaggcagaatttcaaatgcacaaaaaaactgtgtgcaagtattaatgtttaataacaatagtttataagtggaggttttcggtttagcttctgatcaatg |
37407692 |
T |
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| Q |
213 |
acaaatgagaaatttctcaattgagatgttttgttaaactagagttggtttatttgctttgtatgcatgcaaatatgctacctggctaacaagacatggt |
312 |
Q |
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| T |
37407691 |
acaaatgagaaatttctcaattgagatgttttgttaaactagagttggtttatttgctttgtatgcatgcaaatatgctacctggctaacaagacatggt |
37407592 |
T |
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| Q |
313 |
tcattat |
319 |
Q |
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||||||| |
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| T |
37407591 |
tcattat |
37407585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 42412410 - 42412480
Alignment:
| Q |
63 |
tttcttttacgttccaaattagctagtaaaatcaaagc-ataccaaaacaaaaggcagaatttcaaatgca |
132 |
Q |
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||||||||| |||||||||||||| |||||||||||| |||||| |||||| || || |||| ||||||| |
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| T |
42412410 |
tttcttttatattccaaattagctaataaaatcaaagcaataccagaacaaatggtagtatttgaaatgca |
42412480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 20708729 - 20708674
Alignment:
| Q |
234 |
tgagatgttttgttaaactagagttggtttatttgctttgtatgcatgcaaatatg |
289 |
Q |
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|||||||||||| | ||| |||| |||||| ||||||||||| ||||||||||||| |
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| T |
20708729 |
tgagatgttttggtgaacaagagctggtttgtttgctttgtaagcatgcaaatatg |
20708674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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