View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14312_low_8 (Length: 352)
Name: NF14312_low_8
Description: NF14312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14312_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 12355763 - 12356082
Alignment:
| Q |
19 |
gcagtaaacatctctttgtattaataaagttttgccaatgaaagaactaaattggactctaaatctaaaatgattaagctacctcatctgaatctaaatc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12355763 |
gcagtaaacatctctttgtattaataaagttttgccaatgaaagaaccaaattggactctaaatctaaaatgattaagctacctcatctgaatctaaatc |
12355862 |
T |
|
| Q |
119 |
attttccctccttgaatttttcacagggaagaaaacatttgaaacatcacctccactgtgcaatttttgtacccaaagaaagagtcagaaatcacgaact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12355863 |
attttccctccttgaatttttcacagggaagaaaacatttgaaacatcacctccactgtgcaatttttgtacccaaagaaagagtcagaaatcacgaact |
12355962 |
T |
|
| Q |
219 |
ttcaatcttgataaaatcacaaactaggctgaagtgagggtcattgaaaacataggactcaatctaatctcagatacgagataaaatatcacttaaatat |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12355963 |
ttcaatcttgagaaaatcacaaactaggctgaagtgagggtcattgaaaacataggactcaatctaatctcagatacgagataaaacatcacttaaatat |
12356062 |
T |
|
| Q |
319 |
ttacgcactttcgaaatttg |
338 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12356063 |
ttacgcactttcgaaatttg |
12356082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University