View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14313_high_11 (Length: 313)
Name: NF14313_high_11
Description: NF14313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14313_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 4 - 299
Target Start/End: Complemental strand, 1785111 - 1784816
Alignment:
| Q |
4 |
aatattcaaaaggttagaacaattataattggtcaaagaccaattgcacatatataaaggtctatctactagctcattcctaatcatagagatataatat |
103 |
Q |
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| T |
1785111 |
aatattcaaaaggttagaacaattataattggtcaaagaccaattgcacatatataaaggtctatctactagctcattcctaatcatagagatataatat |
1785012 |
T |
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| Q |
104 |
attatcaatatgtttaaacggggaagacacgtaattgtgttgattcttctcttcttcattctttcattttctgttgatgttaatggaaagcactttgtgc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1785011 |
attatcaatatgtttaaacggggaagacacgtaattgtgttgattcttctcttcttcattctttcattttctgttgatgttaatggaaagcactttgtgc |
1784912 |
T |
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| Q |
204 |
ttgttcatggagctggccatggtgcatggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattgacatggctg |
299 |
Q |
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| T |
1784911 |
ttgttcatggagctggccatggtgaatggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattgacatggctg |
1784816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 299
Target Start/End: Complemental strand, 1801925 - 1801626
Alignment:
| Q |
4 |
aatattcaaaaggttagaacaattataattggtcaaagaccaattgcacatata-------taaaggtctatctactagctcattcctaatcatagagat |
96 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||| || ||||| ||||||||||| || |||||||||||||||||||||||| |
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| T |
1801925 |
aatattcaaaaggttagaacatttataattggtcaatgaccaaacacatatataaaggagctaaaggtctatgtattagctcattcctaatcatagagat |
1801826 |
T |
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| Q |
97 |
ataatatattatcaatatgtttaaacggggaagacacgtaattgtgttgattcttctcttcttcattctttcattttctgttgatgttaatggaaagcac |
196 |
Q |
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| T |
1801825 |
ataatatattatcaacatgtttaaacaaggaagacacgt---tgtgttgattcttctcttctttattctttcatttttcattggtgctaatgggaagcac |
1801729 |
T |
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| Q |
197 |
tttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattgacatgg |
296 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
1801728 |
tttgtgcttgttcatggagctttccatggtgcatggtgttggtataaggttgcaactatgcttaaattagctggtcataatgttacaactattgacttgg |
1801629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 63 - 291
Target Start/End: Complemental strand, 1777815 - 1777590
Alignment:
| Q |
63 |
gtctatctactagctcattcctaatcatagagatataatatattatcaatatgtttaaacggggaagacacgtaattgtgttgattcttctcttcttcat |
162 |
Q |
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| T |
1777815 |
gtctatctaatagctcattcctaattatagagatataatatattattaatatgtttaaccgggaaagacacgt---tgtgctgattcttctcttctttat |
1777719 |
T |
|
| Q |
163 |
tctttcattttctgttgatgttaatggaaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaactatgcttaaa |
262 |
Q |
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||||||||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |
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| T |
1777718 |
tctttcatttttcattggtgctaatgggaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaaccatgttgaaa |
1777619 |
T |
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| Q |
263 |
tcagctggtcataatgttacaactattga |
291 |
Q |
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| T |
1777618 |
tcagctggtcataatgttaccacaattga |
1777590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 1772696 - 1772624
Alignment:
| Q |
219 |
gccatggtgcatggtgttggtataaggttgcaactatgcttaaatcagctggtcataatgttacaactattga |
291 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1772696 |
gccatggtgcatggtgttggtataaggtggtaactatgcttaaatcagctggtcataatgttacaactattga |
1772624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 276
Target Start/End: Complemental strand, 1769054 - 1768968
Alignment:
| Q |
190 |
aaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttgcaactatgcttaaatcagctggtcataa |
276 |
Q |
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||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
1769054 |
aaagcactttgtgttgattcatggaggcatccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataa |
1768968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 149 - 291
Target Start/End: Original strand, 25727482 - 25727624
Alignment:
| Q |
149 |
cttctcttcttcattctttcattttctgttgatgttaatggaaagcactttgtgcttgttcatggagctggccatggtgcatggtgttggtataaggttg |
248 |
Q |
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||||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
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| T |
25727482 |
cttctcttctttattctttcatttttcattggtgttaatgggaagcactttgtgcttgttcatggacctttccatggtgcatggtcttggtataaggttg |
25727581 |
T |
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| Q |
249 |
caactatgcttaaatcagctggtcataatgttacaactattga |
291 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25727582 |
caactatgctgaaatcagctggtcataatgttacaactattga |
25727624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 25727352 - 25727482
Alignment:
| Q |
4 |
aatattcaaaaggttagaacaattataattggtcaaagaccaattgcacatatataaa--------------ggtctatctactagctcattcctaatca |
89 |
Q |
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| T |
25727352 |
aatattcaaaaggttagaacaattataattggtcaaaaaccaa--gcacttatataaaggagctaagctaaaggtctatctactagctcattcctaatta |
25727449 |
T |
|
| Q |
90 |
tagagatataatatattatcaatatgtttaaac |
122 |
Q |
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||||||||||||| |||||||| ||||| |||| |
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| T |
25727450 |
tagagatataatacattatcaagatgttgaaac |
25727482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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