View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14313_high_3 (Length: 503)
Name: NF14313_high_3
Description: NF14313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14313_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Complemental strand, 27801704 - 27801234
Alignment:
| Q |
15 |
cataggatattccaaggaatgaggagaagaaacttctcaccagctga-ggaacggcttcattgtcacgtctgaatatagtaccagtagcacatagggtaa |
113 |
Q |
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| T |
27801704 |
cataggatattccaaggaatgaggagaagaaacttctcaccagctgaaggaacggcttcattgtcacgtctgaatatagtaccagtagcacatagggtaa |
27801605 |
T |
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| Q |
114 |
gttggcgattcaagaacagcttgtcaatggactcatcatctcactgcacaaaatagaaaagtgattaaaaactatggagtgtaaaagcgtgtaatgcaac |
213 |
Q |
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| T |
27801604 |
gttggcgattcaagaacagcttgtcaatggactcatcatctcactgcacaaaatagaaaagtgattaaaaactatggagtgtaaaagcgtgtaatgcaac |
27801505 |
T |
|
| Q |
214 |
gttggtgtaaaattattttctattggaaaaaatggtaaaaccggacagatttgaaaacccaactacatagtgccaaaaggccactaaagccaagaataat |
313 |
Q |
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| T |
27801504 |
gttggtgtaaaattattttctattggaaaaaatggtaaaatcggacagatttgaaaacccaactacatagtgccaaaaggccactaaagccaagaataat |
27801405 |
T |
|
| Q |
314 |
ttggagagatgaagaaactataagggcatcctgtaatcccctcattattatcccaaatctctgcatatttgtcaattgaacaataatgattacttaacag |
413 |
Q |
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| T |
27801404 |
ttggagagatgaagaaactataagggcatcctgtaatcccctcattattatcccaaatctctgcatatttgtcaattgaacaataatgattacttaacag |
27801305 |
T |
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| Q |
414 |
aaagcnnnnnnnnnnnnnnnntgaagatctaatcaactaaagtttgtgacaaaccaacctcatgagggttc |
484 |
Q |
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| T |
27801304 |
aaagcaaaacaaaaataaaaatgaagatctgatcaactaaagcttgtgacaaaccaacctcatgagggttc |
27801234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 27770861 - 27770799
Alignment:
| Q |
25 |
tccaaggaatgaggagaagaaacttctcaccagctgaggaacggcttcattgtcacgtctgaa |
87 |
Q |
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| T |
27770861 |
tccaaggaatgatgtgaagcaacttctcaccagctgagcaacggattcattgttatgtctgaa |
27770799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 289 - 416
Target Start/End: Original strand, 26474834 - 26474961
Alignment:
| Q |
289 |
aaaggccactaaagccaagaataatttggagagatgaagaaactataagggcatcctgtaatcccctcattattatcccaaatctctgcatatttgtcaa |
388 |
Q |
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|||| |||||||||||||||| |||||| || | ||||| ||||||||||||| ||||| |||||||||||| || ||||| |||||||||||||||| |
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| T |
26474834 |
aaagtccactaaagccaagaacaatttgaagtgttgaagcaactataagggcaccctgtgttcccctcattatcttctcaaatttctgcatatttgtcaa |
26474933 |
T |
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| Q |
389 |
ttgaacaataatgattacttaacagaaa |
416 |
Q |
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| T |
26474934 |
ttagacaacaatgattacataatagaaa |
26474961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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