View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14313_high_5 (Length: 402)
Name: NF14313_high_5
Description: NF14313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14313_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 132 - 395
Target Start/End: Original strand, 5037537 - 5037798
Alignment:
| Q |
132 |
gttgacaaaattcagtatttatagttgggacaattttttcttaaagtggcttataataatggaaagggttaatacaaatgatggcttaagattatgctag |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5037537 |
gttgacaaaattcagtatttatagttgggacaattttttcttagagtgacttataataatggaaagggttaatacaaatgatagcttaagattatgctag |
5037636 |
T |
|
| Q |
232 |
ttcaaacatatattattttgaaaattttgtgtttttaaatgacattccccatgtaactctttatatctgacataaacaaaattaatgaaaatatttcaaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5037637 |
ttcaaacatatattattttgaaaatt--gtgtttttaaataacattccccatgtaactctttatatctgacacaaacaaaattaatgaaaatatttcaaa |
5037734 |
T |
|
| Q |
332 |
tacagcttggtactaaagttattaagtttgaagagcgtattagatgtacttgttgcctttgcta |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5037735 |
tacagcttggtactaaagttattaagtttgaagagcgtattagatgtacttgttgcctttgcta |
5037798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 41974788 - 41974832
Alignment:
| Q |
20 |
atgcataatatatgcaaggaggtttgaggttcaaaccccggccaccac |
67 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41974788 |
atgcataatatatgcaagg---tttgaggttcaaaccccggccaccac |
41974832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 5037427 - 5037524
Alignment:
| Q |
23 |
cataatatatgcaaggaggtttgaggttcaaaccccggccaccac---nnnnnnnnntaataacaatggatttagctggtaaattagaaatatagttt |
117 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||| ||||||| |||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
5037427 |
cataatatatgcaaggaggtctggggttcaaactccgaccaccacaaaaaaaaaaattaataataatggatttagctagtaaattagaaatatagttt |
5037524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 43034376 - 43034332
Alignment:
| Q |
20 |
atgcataatatatgcaaggaggtttgaggttcaaaccccggccaccac |
67 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
43034376 |
atgcataatatatgcaagg---tctgaggttcaaaccccggccaccac |
43034332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 8075812 - 8075856
Alignment:
| Q |
20 |
atgcataatatatgcaaggaggtttgaggttcaaaccccggccaccac |
67 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
8075812 |
atgcataatatatgcaagg---tctgaggttcaaaccccggccaccac |
8075856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 42547975 - 42548003
Alignment:
| Q |
39 |
aggtttgaggttcaaaccccggccaccac |
67 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42547975 |
aggtttgaggttcaaaccccggccaccac |
42548003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 10723966 - 10724010
Alignment:
| Q |
20 |
atgcataatatatgcaaggaggtttgaggttcaaaccccggccaccac |
67 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
10723966 |
atgcataatatatgcaagg---tctgaggttcaaaccccggccaccac |
10724010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 31682919 - 31682891
Alignment:
| Q |
39 |
aggtttgaggttcaaaccccggccaccac |
67 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31682919 |
aggtttgaggttcaaaccccggccaccac |
31682891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University