View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14313_high_9 (Length: 346)

Name: NF14313_high_9
Description: NF14313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14313_high_9
NF14313_high_9
[»] chr8 (5 HSPs)
chr8 (13-331)||(44890727-44891053)
chr8 (13-87)||(12233741-12233815)
chr8 (106-169)||(12234201-12234264)
chr8 (105-158)||(44890265-44890317)
chr8 (95-167)||(12233675-12233747)
[»] scaffold0027 (1 HSPs)
scaffold0027 (95-169)||(140230-140304)
[»] chr3 (1 HSPs)
chr3 (95-169)||(35564356-35564430)
[»] chr5 (1 HSPs)
chr5 (123-168)||(17262634-17262679)
[»] chr2 (1 HSPs)
chr2 (105-169)||(10472850-10472912)
[»] chr6 (1 HSPs)
chr6 (122-174)||(21604000-21604052)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 44890727 - 44891053
Alignment:
Q  13 tgagatgaatttcatttagtgtttcagatgtgcatcctttgtaatttcaggtttgaagttccgcgctagttaactactctcggtta--------actgtt 104  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||        ||||||    
T  44890727 tgagacgaatttcatttagtgtttcagatctgcatcctttgtaatttcaggtttgaagttcagcggtagttaactactgtcggttaatttgttaactgtt 44890826  T
Q  105 gaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttccaacattgaatcacttggccaaaatactcatgtac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44890827 gaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttccaacattgaatcacttggccaaaatactcatgtac 44890926  T
Q  205 ccacttagagcacctcgcatatactcctactccaccgacactcgctccatgacagaaggtttacgattcagcattttaaccagcaaactactgcttcctc 304  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  44890927 ccacttagagcaccttgcatatactcctactccaccgacactcgctccatgacagaaggtttacgattcggcattttaaccagcaaactgctgcttcctc 44891026  T
Q  305 aaaaaactagtttaatttcttgatatt 331  Q
    |||||||||||||||||||||||||||    
T  44891027 aaaaaactagtttaatttcttgatatt 44891053  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 12233815 - 12233741
Alignment:
Q  13 tgagatgaatttcatttagtgtttcagatgtgcatcctttgtaatttcaggtttgaagttccgcgctagttaact 87  Q
    ||||| |||||||||||| |||||||||| |||||||| | |||||| || |||| |||||||||  ||||||||    
T  12233815 tgagacgaatttcatttattgtttcagatctgcatcctctataattttagatttggagttccgcggcagttaact 12233741  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 12234201 - 12234264
Alignment:
Q  106 aaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttc 169  Q
    ||||||||||||| ||||||| || ||||| | || |||||||||| |||||| ||||||||||    
T  12234201 aaggggtatttcagtattttattggtgtgtataagcttaaacacatgtgtgaacatcaattttc 12234264  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 44890317 - 44890265
Alignment:
Q  105 gaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaa 158  Q
    |||||||||||||  ||||||||| ||||||||||| |||||||||| ||||||    
T  44890317 gaaggggtatttccgtattttact-atgtgtttcagcttaaacacatgtgtgaa 44890265  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 12233747 - 12233675
Alignment:
Q  95 gttaactgttgaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattt 167  Q
    ||||||||| |||||||||||||  | ||||| |  |||||||||| |||||||||| |||||| | ||||||    
T  12233747 gttaactgtcgaaggggtatttcggtcttttattagtgtgtttcagcttaaacacatgtgtgaacaacaattt 12233675  T

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Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 140230 - 140304
Alignment:
Q  95 gttaactgttgaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttc 169  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||| ||||||| || |||||| | ||||||||    
T  140230 gttaactgttgaaggtgtatttcgatattttactggtgtgtttcagcttaaacatatgtgtgaacaacaattttc 140304  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 35564356 - 35564430
Alignment:
Q  95 gttaactgttgaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttc 169  Q
    ||||||||  ||||||||||||   ||||||| ||||||||||||| |||||||| | ||| || ||||||||||    
T  35564356 gttaactgccgaaggggtattttggtattttattgatgtgtttcagcttaaacacgtgtgtaaacatcaattttc 35564430  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 17262679 - 17262634
Alignment:
Q  123 tttactgatgtgtttcaggttaaacacatatgtgaagatcaatttt 168  Q
    |||||||||||||||||| |||||||||| |||||| | |||||||    
T  17262679 tttactgatgtgtttcagtttaaacacatgtgtgaacaacaatttt 17262634  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 10472850 - 10472912
Alignment:
Q  105 gaaggggtatttcaatattttactgatgtgtttcaggttaaacacatatgtgaagatcaattttc 169  Q
    |||||||||||||  |||||||||| |||||||||| ||||  ||||||||||| | ||||||||    
T  10472850 gaaggggtatttcggtattttactggtgtgtttcagcttaa--acatatgtgaacaacaattttc 10472912  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 21604000 - 21604052
Alignment:
Q  122 ttttactgatgtgtttcaggttaaacacatatgtgaagatcaattttccaaca 174  Q
    ||||||| ||||||||||| |||||||||| |||||| | |||||||| ||||    
T  21604000 ttttactaatgtgtttcagcttaaacacatgtgtgaacaacaattttcaaaca 21604052  T

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