View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14313_low_15 (Length: 254)
Name: NF14313_low_15
Description: NF14313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14313_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 34985798 - 34986013
Alignment:
| Q |
19 |
aatattcatgttggctatcagaatttcaaaattaacataatgttacatccttttgtttatatttgcagatgagtgcagaatttcatttaccaagtcctgt |
118 |
Q |
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| T |
34985798 |
aatattcatgttggctatcagaatttcaaaattaacataatgttacatccttttatttatatttgcagatgagtgcagaatttcatttaccaagtcctgt |
34985897 |
T |
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| Q |
119 |
tataccaactcggaagtgtgtttttgcaagatatagcaaacaattcactcataacatatgggctgttgttgatgtatctttggaggacattttacaatct |
218 |
Q |
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| T |
34985898 |
tataccaactcggaagtgtgtttttgcaagatatagcaaacaattcactcataacatatgggctgttgttgatgtatctttggaggacattttacaatct |
34985997 |
T |
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| Q |
219 |
ccttcaaacaattttc |
234 |
Q |
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||||| |||||||||| |
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| T |
34985998 |
ccttctaacaattttc |
34986013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 78 - 234
Target Start/End: Original strand, 34994221 - 34994377
Alignment:
| Q |
78 |
tatttgcagatgagtgcagaatttcatttaccaagtcctgttataccaactcggaagtgtgtttttgcaagatatagcaaacaattcactcataacatat |
177 |
Q |
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|||||||||||||||||||||||| |||| || |||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
34994221 |
tatttgcagatgagtgcagaattttatttgcctagtccttttataccaactcgggagtgtgtgtttgcaagatatagcaaacaatttactcataacatat |
34994320 |
T |
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| Q |
178 |
gggctgttgttgatgtatctttggaggacattttacaatctccttcaaacaattttc |
234 |
Q |
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| T |
34994321 |
gggctgttgttgatgtatctttggaggacattttaccttctttctcaaacaattttc |
34994377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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