View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14313_low_21 (Length: 207)
Name: NF14313_low_21
Description: NF14313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14313_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 40280428 - 40280608
Alignment:
| Q |
11 |
gaagaatatacttgctgcagacattccactttggaactccaataagctcggcatggagcgccttttgtacatcgcgtctgtttaagtaatttgtaacttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40280428 |
gaagaatatacttgctgcagacattccactttggaactccaataagctcggcatggagcgccttttgtacatcgcgtctgtttaagtaatttgtaacttc |
40280527 |
T |
|
| Q |
111 |
gtcatctacacatacatctatactctcatttgcatgctgtttggaaaagtgaaagaatttctcaaatcacaatgatcaagc |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40280528 |
gtcatctacacatacatctatactctcatttgcatgctgtttggaaaagtgaaagaatttctcaaatcacaatgatcaagc |
40280608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 45128486 - 45128615
Alignment:
| Q |
19 |
tacttgctgcagacattccactttggaactccaataagctcggcatggagcgccttttgtacatcgcgtctgtttaagtaatttgtaactttgtcatcta |
118 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| |||| ||||| || |||| ||| ||||| | ||||||||||| |||||||| |||||||| | |
|
|
| T |
45128486 |
tacttgctgcagacatcccacttgcgaactccaacgagctttgcatgaagtgcctcttgcacatctctcctgtttaagtagtttgtaaccttgtcatcca |
45128585 |
T |
|
| Q |
119 |
cacatacatctatactctcatttgcatgct |
148 |
Q |
| |
|
||||||||||||| | |||||||| |||| |
|
|
| T |
45128586 |
cacatacatctatcatttcatttgcttgct |
45128615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University