View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14313_low_8 (Length: 378)
Name: NF14313_low_8
Description: NF14313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14313_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 511366 - 511723
Alignment:
| Q |
1 |
gaaataacaaattattaaaattggtctacttaaaatgttgttataaaaggagactgaagagaagaaaaaacatttgcaaagatgaaacctgcatnnnnnn |
100 |
Q |
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| T |
511366 |
gaaataacaaattattaaaattggcctacttaaaatgttgttataaaaagagactgaagagaagaaaaaacatttgcaaagatgaaacctgcataaaaaa |
511465 |
T |
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| Q |
101 |
nntgattggatgaagaaacatccagactagaatcacatttacctcccaaggtaaaggagctcattctcatattggtagtgaatcaacatatggtttatta |
200 |
Q |
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| T |
511466 |
a-tgattggatgaagaaacatccagactagaatcacatttacctcccaaggtaaaggagctcattctcatattggtagtgaatcaacatatggtttatta |
511564 |
T |
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| Q |
201 |
agaaattattggttttcaggttttgatcagtttcgggtaagtttgatttgatttcttggtcaattaaatagttcgtatggttctactgtcaaaaagtaca |
300 |
Q |
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| T |
511565 |
agaaatgattggttttcaggttttgatcagtttcgagtaagttttatttgatttcttggtcaattaaatagttcgt---gttctactgtcaaaaagtaca |
511661 |
T |
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| Q |
301 |
aagaacttagacaagctattcaagaagctaagaataaacatccaaacattaagagaagaatt |
362 |
Q |
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| T |
511662 |
aagaacttagacaagctattcaagaagctaagaataaacatccaaacattaagagaagaatt |
511723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 214 - 334
Target Start/End: Original strand, 38049850 - 38049970
Alignment:
| Q |
214 |
tttcaggttttgatcagtttcgggtaagtttgatttgatttcttggtcaattaaatagttcgtatggttctactgtcaaaaagtacaaagaacttagaca |
313 |
Q |
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| T |
38049850 |
tttcaggttttgatcggtttcgagcaaacttgattcgatttcttggtcaattaaatagtttgtctggttcttctgtcaaaatgtacagagaacttagaca |
38049949 |
T |
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| Q |
314 |
agctattcaagaagctaagaa |
334 |
Q |
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| T |
38049950 |
agccattcaggaagctaagaa |
38049970 |
T |
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