View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14313_low_9 (Length: 361)
Name: NF14313_low_9
Description: NF14313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14313_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 5729292 - 5729101
Alignment:
| Q |
5 |
tagattatacttatccaatt-tgtgagaagagaagatagatttttacaaacaaacaaaagctaattttactcatatctcactttcagaacaatacataaa |
103 |
Q |
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| T |
5729292 |
tagattttacttatccaattatgtgagaagagaagatagatttttacaaacaaacaaaagctaattttactcatatctcactttcagaacaatacataaa |
5729193 |
T |
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| Q |
104 |
cagtccctaatttccatagttttcaagtatcaagcatgtaaataaagtaactgagagtgagacaaaatgtagtgtaaataaattaaggagaa |
195 |
Q |
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| T |
5729192 |
cagtccctaatttccatagttttcaagtatcaagcatgtaaataaagtaactgagagtgagacaaaatgtagtgtaaataaagtaaggagaa |
5729101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 192 - 355
Target Start/End: Complemental strand, 5729018 - 5728854
Alignment:
| Q |
192 |
agaaagttggtgttgtagttcttccgtggcaacaaattctaccaggcttttctctgtcacataccttcccaagttcgtatcttcttttcgagagtgtaga |
291 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5729018 |
agaaagttggtgctgtagttcttccgtggcaacaaattctacaaggcttttctctgtcacatactctcccaagttcgtatcttcttttcgagagtgtaga |
5728919 |
T |
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| Q |
292 |
atac-aaaactttgtagttaaatgtgtctaatttgcacaattttagcatatgtaatattcttcga |
355 |
Q |
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| T |
5728918 |
atacaaaaactttgtagttaaatgtgtctaatttgcacaattttagtatatgtaatttttttcga |
5728854 |
T |
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