View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14314_high_10 (Length: 289)

Name: NF14314_high_10
Description: NF14314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14314_high_10
NF14314_high_10
[»] chr3 (2 HSPs)
chr3 (180-278)||(7685036-7685134)
chr3 (16-115)||(7685199-7685294)
[»] chr8 (2 HSPs)
chr8 (180-278)||(36904589-36904687)
chr8 (72-110)||(36904761-36904799)
[»] chr1 (1 HSPs)
chr1 (16-61)||(16101748-16101793)
[»] chr5 (1 HSPs)
chr5 (24-64)||(38979240-38979280)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 7685134 - 7685036
Alignment:
Q  180 agacctatcaggcagccattatgttgtgactttggtgtaatgcaactatgagttgctcttttatgttgggttgtgtaaacaattatgcattttgtgatg 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7685134 agacctatcaggcagccattatgttgtgactttggtgtaatgcaactatgagttgctcttttatgttgggttgtgtaaacaattatgcattttgagatg 7685036  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 7685294 - 7685199
Alignment:
Q  16 atgaacaccataagtacggaccaaaccacgacctctttgactagggtctatttatatataggcagcatgtcttatttggcctaactacctctcaactcag 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||| |||||||||||||||||||    
T  7685294 atgaacaccataagtaccgaccaaaccacgacctctttgactagggtctatt----tataggcagcatgtcttatttggcttaactacctctcaactcag 7685199  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 36904687 - 36904589
Alignment:
Q  180 agacctatcaggcagccattatgttgtgactttggtgtaatgcaactatgagttgctcttttatgttgggttgtgtaaacaattatgcattttgtgatg 278  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||    
T  36904687 agacctatcaagcagccattatgttgtgactttggtgtaatgcaactatgagttattcttttatgttgggttgtgtaaacaattatgcattttgagatg 36904589  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 36904799 - 36904761
Alignment:
Q  72 tataggcagcatgtcttatttggcctaactacctctcaa 110  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36904799 tataggcagcatgtcttatttggcctaactacctctcaa 36904761  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 16101793 - 16101748
Alignment:
Q  16 atgaacaccataagtacggaccaaaccacgacctctttgactaggg 61  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  16101793 atgaacgccataagtacggaccaaaccacaacctctttgactaggg 16101748  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 38979280 - 38979240
Alignment:
Q  24 cataagtacggaccaaaccacgacctctttgactagggtct 64  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  38979280 cataagtgcagaccaaaccacgacctctttgactagggtct 38979240  T

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