View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14314_high_6 (Length: 387)

Name: NF14314_high_6
Description: NF14314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14314_high_6
NF14314_high_6
[»] chr5 (12 HSPs)
chr5 (17-377)||(1280165-1280525)
chr5 (187-368)||(26540692-26540873)
chr5 (187-368)||(203808-203988)
chr5 (236-368)||(3055488-3055620)
chr5 (234-368)||(8785786-8785920)
chr5 (267-368)||(27168840-27168941)
chr5 (244-328)||(11852729-11852813)
chr5 (234-368)||(23244607-23244741)
chr5 (280-368)||(22712936-22713024)
chr5 (249-368)||(22541905-22542024)
chr5 (294-368)||(19518979-19519053)
chr5 (280-368)||(2228965-2229053)
[»] scaffold0019 (1 HSPs)
scaffold0019 (187-368)||(134891-135072)
[»] chr7 (15 HSPs)
chr7 (187-368)||(26493751-26493932)
chr7 (187-368)||(27387343-27387524)
chr7 (187-368)||(19399935-19400116)
chr7 (187-368)||(38575326-38575507)
chr7 (209-368)||(45197623-45197781)
chr7 (238-368)||(9230409-9230539)
chr7 (234-360)||(23179930-23180056)
chr7 (236-337)||(43728002-43728103)
chr7 (234-368)||(8638618-8638753)
chr7 (244-330)||(18375420-18375506)
chr7 (297-368)||(14088815-14088886)
chr7 (297-368)||(14398833-14398904)
chr7 (297-365)||(25491674-25491742)
chr7 (303-368)||(25024596-25024661)
chr7 (234-278)||(23804625-23804669)
[»] scaffold0168 (1 HSPs)
scaffold0168 (187-368)||(15771-15952)
[»] chr2 (17 HSPs)
chr2 (187-368)||(34526309-34526490)
chr2 (187-368)||(22464627-22464808)
chr2 (187-368)||(22483506-22483687)
chr2 (187-368)||(33453225-33453406)
chr2 (187-368)||(35649697-35649876)
chr2 (221-368)||(19951868-19952015)
chr2 (17-188)||(19952052-19952223)
chr2 (234-368)||(12539578-12539711)
chr2 (261-350)||(13308747-13308836)
chr2 (17-143)||(33453809-33453934)
chr2 (234-368)||(34317510-34317638)
chr2 (294-368)||(18425998-18426072)
chr2 (294-344)||(26656401-26656452)
chr2 (269-371)||(34907624-34907726)
chr2 (315-368)||(31392485-31392538)
chr2 (187-223)||(9844961-9844997)
chr2 (332-368)||(45121334-45121370)
[»] chr8 (20 HSPs)
chr8 (186-368)||(16532668-16532850)
chr8 (187-368)||(30791495-30791676)
chr8 (187-368)||(21958469-21958650)
chr8 (234-368)||(14446836-14446970)
chr8 (234-368)||(27190775-27190909)
chr8 (236-368)||(13152431-13152563)
chr8 (230-368)||(9256389-9256527)
chr8 (234-338)||(28846625-28846726)
chr8 (269-368)||(10014472-10014571)
chr8 (234-363)||(24333718-24333850)
chr8 (252-327)||(10467786-10467861)
chr8 (294-368)||(32372022-32372096)
chr8 (294-368)||(32359486-32359560)
chr8 (299-368)||(40146047-40146116)
chr8 (294-368)||(32342880-32342954)
chr8 (294-368)||(32355367-32355441)
chr8 (296-365)||(34228269-34228338)
chr8 (247-327)||(42446935-42447015)
chr8 (301-340)||(2826368-2826407)
chr8 (117-188)||(34228921-34228995)
[»] chr4 (13 HSPs)
chr4 (187-360)||(27364840-27365013)
chr4 (187-368)||(55464697-55464878)
chr4 (234-368)||(31944620-31944754)
chr4 (236-368)||(53693071-53693203)
chr4 (17-193)||(12211641-12211827)
chr4 (229-368)||(12211263-12211402)
chr4 (209-340)||(42843686-42843817)
chr4 (234-368)||(4325416-4325549)
chr4 (280-368)||(3074419-3074507)
chr4 (294-368)||(3240311-3240385)
chr4 (294-368)||(8897963-8898037)
chr4 (294-368)||(10632681-10632757)
chr4 (315-374)||(1147584-1147643)
[»] chr3 (13 HSPs)
chr3 (187-368)||(31988986-31989167)
chr3 (187-368)||(43137084-43137264)
chr3 (187-368)||(53710355-53710536)
chr3 (187-368)||(24908430-24908611)
chr3 (187-368)||(37381906-37382087)
chr3 (234-368)||(15667977-15668111)
chr3 (234-368)||(51261983-51262117)
chr3 (17-188)||(43136298-43136471)
chr3 (234-368)||(3856913-3857047)
chr3 (294-368)||(22934836-22934910)
chr3 (17-134)||(37382556-37382672)
chr3 (301-368)||(24988850-24988917)
chr3 (249-321)||(43585836-43585908)
[»] scaffold0007 (1 HSPs)
scaffold0007 (187-368)||(259875-260056)
[»] chr1 (15 HSPs)
chr1 (187-368)||(21973825-21974006)
chr1 (187-331)||(17127396-17127540)
chr1 (234-368)||(9637125-9637259)
chr1 (17-188)||(26273145-26273317)
chr1 (234-368)||(25017390-25017524)
chr1 (221-368)||(26272966-26273113)
chr1 (234-368)||(48606649-48606783)
chr1 (255-368)||(35949015-35949128)
chr1 (234-368)||(30559042-30559176)
chr1 (234-368)||(40864756-40864890)
chr1 (236-368)||(52753857-52753986)
chr1 (236-368)||(14498904-14499035)
chr1 (234-368)||(32379893-32380023)
chr1 (264-368)||(30054855-30054959)
chr1 (297-368)||(17874845-17874916)
[»] scaffold0012 (1 HSPs)
scaffold0012 (187-368)||(197062-197243)
[»] chr6 (10 HSPs)
chr6 (184-368)||(24074366-24074550)
chr6 (234-368)||(12180562-12180696)
chr6 (230-368)||(11970960-11971097)
chr6 (234-368)||(25340449-25340583)
chr6 (269-368)||(3050902-3051001)
chr6 (237-368)||(25599159-25599293)
chr6 (283-368)||(30621226-30621310)
chr6 (244-368)||(32442011-32442132)
chr6 (280-365)||(1296559-1296644)
chr6 (187-223)||(10895202-10895238)
[»] scaffold0015 (1 HSPs)
scaffold0015 (187-368)||(214198-214379)
[»] scaffold0178 (1 HSPs)
scaffold0178 (234-368)||(17744-17878)
[»] scaffold0198 (1 HSPs)
scaffold0198 (264-368)||(1430-1534)
[»] scaffold0002 (1 HSPs)
scaffold0002 (234-368)||(435385-435526)
[»] scaffold0726 (1 HSPs)
scaffold0726 (301-368)||(954-1021)
[»] scaffold0024 (1 HSPs)
scaffold0024 (187-223)||(12036-12072)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 1280165 - 1280525
Alignment:
Q  17 attttgcacatgtttttgttattttgcacatagcctgcatgaggtggaatttcatgtgttaaatcaaacttattatattatatgggatttcatgtgaaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1280165 attttgcacatgtttttgttattttgcacatagcctgcatgaggtggaatttcatgtgttaaatcaaacttattatattatatgggatttcatgtgaaat 1280264  T
Q  117 tgtgaatcatcataataagtgtgattagtatcaactatcaagcatgaaactattatttccaactatatttaaagagctttttcagcaatgaagattatca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  1280265 tgtgaatcatcataataagtgtgattagtatcaactatcaagcatgaaactattctttccaactatatttaaagagctttttcaacaatgaagattatca 1280364  T
Q  217 agtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1280365 agtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatat 1280464  T
Q  317 tattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaatattcttgga 377  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||    
T  1280465 tattcgaacattcaccgcaaagaggtctcggaaaaggcatttacctcctaattttattgga 1280525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 26540873 - 26540692
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||| |||||||    
T  26540873 aaagagctttttcagcaatgaagattatcaagactaaattgcgcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcggga 26540774  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||    
T  26540773 gatattcaaatcacttgatgacattgatattattcgaacattcaccgcaaagaaatctcagaaagggcatttacctcctaat 26540692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 203808 - 203988
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||  |  ||||| |||||||||||||||||| |||||||    
T  203808 aaagagctttttcagcaatgaaaattatcaagactaaattgtgcaacaagatcaacaatgtgta-taaaatgacttgatgatatgttacaccgagcggga 203906  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||||||    
T  203907 gatattcaagtcacttgatgatgttgatattattcgaacattcaccggaaagaggtctcggaaaggacatttacctcctaat 203988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 236 - 368
Target Start/End: Original strand, 3055488 - 3055620
Alignment:
Q  236 gatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgca 335  Q
    ||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||  ||||    
T  3055488 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcatttgatgatgttgatattattcgaacattccgcgca 3055587  T
Q  336 aagagatctcggaaaaggcatttacctcctaat 368  Q
    | ||| ||||  ||| |||||||||||||||||    
T  3055588 atgaggtctcataaatggcatttacctcctaat 3055620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 8785786 - 8785920
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||||||||||||| ||||| |||| ||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  8785786 aagatcaacgatgtgtggttcaatgacttgataatatattacatcaagcgggagatattcaattcagttgatgatattgatattattcgaacattcaccg 8785885  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||| || ||||| ||| ||   ||||||||||||    
T  8785886 caaataggtctcgaaaagggttcttacctcctaat 8785920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 267 - 368
Target Start/End: Complemental strand, 27168941 - 27168840
Alignment:
Q  267 atatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctccta 366  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||  ||| |||||||||||||||    
T  27168941 atatgttacaccgagcgggagatattcaagtcacttgataatgttgatattattcgaacattcaccgaaatgaggtctcataaagggcatttacctccta 27168842  T
Q  367 at 368  Q
    ||    
T  27168841 at 27168840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 328
Target Start/End: Original strand, 11852729 - 11852813
Alignment:
Q  244 atgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 328  Q
    |||||||||||||||| |||||||||||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||    
T  11852729 atgtgtggttcaatgacttgatgatatgttacaccgaacgggagatatttaactcacttgatgatgttgatattattcgaacatt 11852813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 23244741 - 23244607
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||| ||||||||| ||||||||||||||   | ||||| || ||||| |||||||||||||||||||||||||| ||||||| ||||    
T  23244741 aagatcaacgatgtgtcgttcaatgacttgatgatatgttatgtcgagcggaagttattctagtcacttgatgatgttgatattatttgaacattaaccg 23244642  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||| ||| |||| |||| ||||| ||||| |||||    
T  23244641 caacgaggtctcagaaagggcatgtacctgctaat 23244607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 22713024 - 22712936
Alignment:
Q  280 agcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||  ||||||||||||||||    
T  22713024 agcgggggatattcatgtcacttgatgatgttgatattattcaaacattcaccgcaaagaggtctcagaaagagcatttacctcctaat 22712936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 249 - 368
Target Start/End: Original strand, 22541905 - 22542024
Alignment:
Q  249 tggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcgga 348  Q
    ||||| ||||| |||||||||||||||| | | ||| |||||||||||||||| ||||||||| ||||||||||||||||| |   |||||| || ||||    
T  22541905 tggttgaatgacttgatgatatgttacatcgaacggaagatattcaagtcactcgatgatgttaatattattcgaacattccctcgaaagaggtcgcgga 22542004  T
Q  349 aaaggcatttacctcctaat 368  Q
    || |||||||||||| ||||    
T  22542005 aagggcatttacctcataat 22542024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 19519053 - 19518979
Alignment:
Q  294 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| | |||||||| ||||||    
T  19519053 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtattggaaaggtcatttaccacctaat 19518979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 2228965 - 2229053
Alignment:
Q  280 agcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagat-ctcggaaaaggcatttacctcctaat 368  Q
    ||||| ||||||| |||||| |||||||||||||||||||| ||||||||| ||||||||| | || ||||  |||||||||||||||||    
T  2228965 agcggaagatatttaagtcatttgatgatgttgatattatttgaacattcatcgcaaagaggttctaggaag-ggcatttacctcctaat 2229053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 135072 - 134891
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||||||| ||||| |||||||||||||||||| |||||||    
T  135072 aaagagctttttcagcaatgaagattatcaagactaaattgtgcaacaagatgaacaatgtgtggttaaatgacttgatgatatgttacaccgagcggga 134973  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  134972 gatattcaagtcacttgatgatgttgatattattcgaacattcaccggaaagaggtctcggaaagggcatttacctcctaat 134891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 26493932 - 26493751
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||    
T  26493932 aaagagctttttcagcaatgaagattatcaagactaaattgcgcaacaagatgaacaatgtgtggttaaatgacttgatgatacgttacaccgagcggga 26493833  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  26493832 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgtaaagaggtctcggaaagggcatttacctcctaat 26493751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 27387524 - 27387343
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||    
T  27387524 aaagagctttttcagcaatgaagattattaagactaaattgcgcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcggga 27387425  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||| || ||||||  ||||||||||||||||    
T  27387424 gatattcaagtcacttgatgatgttgatattattcgaacattcactcgaaagaggtcgcggaaagagcatttacctcctaat 27387343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 19399935 - 19400116
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||    
T  19399935 aaagagctttttcaacaatgaagattatcaagactaaattgcgcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcggga 19400034  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||| ||||||||||||||||||||||||||||||||   |||||| || |||||| || ||||||||||||||    
T  19400035 gatattcaagtcgcttgatgatgttgatattattcgaacattcactcgaaagaggtcgcggaaagggtatttacctcctaat 19400116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 38575507 - 38575326
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||||| || |||||||||| |||||| || || |||||||||||||||||| |||||||    
T  38575507 aaagagctttttcaacaatgaagattattaagactaaattgcgcaacaatatcaacaatgggtggttgaacgacttgatgatatgttacaccgagcggga 38575408  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||| ||||||||||||||||||||||||||||||||||||||   |||||| || ||||||   |||||||||||||||    
T  38575407 gatattaaagtcacttgatgatgttgatattattcgaacattcactcgaaagaggtcgcggaaagaacatttacctcctaat 38575326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 209 - 368
Target Start/End: Original strand, 45197623 - 45197781
Alignment:
Q  209 gattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgat 308  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||||| |||||||||| || || | ||| ||||||||||||||||||||| |||    
T  45197623 gattatcaagattaaattgcgcaacaagatcaacaatgtgtggttcaatgacttgatgatatatt-catcgagcaggagatattcaagtcacttgacgat 45197721  T
Q  309 gttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||| |||||||||||||| ||||||| ||||||  | ||||||||| |||||||    
T  45197722 gttgatattgttcgaacattcaccacaaagaggtctcggggagggcatttacatcctaat 45197781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 238 - 368
Target Start/End: Original strand, 9230409 - 9230539
Alignment:
Q  238 tcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaa 337  Q
    ||||| |||||||||||||||| ||||||||||||||||   ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||    
T  9230409 tcaacgatgtgtggttcaatgacttgatgatatgttacatagagcgggagatactcaagtcatttgatgatgttgatattattcgaacattcatcgcaaa 9230508  T
Q  338 gagatctcggaaaaggcatttacctcctaat 368  Q
    ||| | ||| ||| |||||||||||||||||    
T  9230509 gaggtatcgaaaagggcatttacctcctaat 9230539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 234 - 360
Target Start/End: Complemental strand, 23180056 - 23179930
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| ||||||| |||||| | |||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||||||||||    
T  23180056 aagatcaacgatgtgtgtttcaataacttgatgatatgttacaccgagcgagagatattcaaggcacttgataatgttgatattattcgaacattcaccg 23179957  T
Q  334 caaagagatctcggaaaaggcatttac 360  Q
    ||||||| ||| ||||| |||||||||    
T  23179956 caaagaggtcttggaaagggcatttac 23179930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 236 - 337
Target Start/End: Original strand, 43728002 - 43728103
Alignment:
Q  236 gatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgca 335  Q
    ||||||| |||||||||||||||| |||||||||||||| | | | |||||||||||||||||| ||||||||||||||||||||| |||||||| ||||    
T  43728002 gatcaacgatgtgtggttcaatgacttgatgatatgttatatcgaacgggagatattcaagtcagttgatgatgttgatattattcaaacattcatcgca 43728101  T
Q  336 aa 337  Q
    ||    
T  43728102 aa 43728103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 8638618 - 8638753
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| | |||||||| ||| | |||||||||||||| ||| | |  ||||||||||||||| |||||||| | ||||||||||||||||||| ||    
T  8638618 aagatcaacgacgtgtggtttaattacttgatgatatgttataccgaacaagagatattcaagtcatttgatgatatcgatattattcgaacattcaacg 8638717  T
Q  334 caaaga-gatctcggaaaaggcatttacctcctaat 368  Q
    |||||| | ||||||||| |||||||||||||||||    
T  8638718 caaagagggtctcggaaagggcatttacctcctaat 8638753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 18375420 - 18375506
Alignment:
Q  244 atgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattca 330  Q
    |||||||||||||||| |||||||||| |||||   |||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  18375420 atgtgtggttcaatgacttgatgatatattacatggagcgggagatattcaaatcactagataatgttgatattattcgaacattca 18375506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 14088815 - 14088886
Alignment:
Q  297 tcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||||| ||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||    
T  14088815 tcacttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaat 14088886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 14398833 - 14398904
Alignment:
Q  297 tcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||||| ||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||    
T  14398833 tcacttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaat 14398904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 25491742 - 25491674
Alignment:
Q  297 tcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcct 365  Q
    ||||||||||||||||||||||||||||||||||| | |||||| ||||  ||||||||||||| ||||    
T  25491742 tcacttgatgatgttgatattattcgaacattcactgtaaagaggtctcaaaaaaggcatttacttcct 25491674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 25024596 - 25024661
Alignment:
Q  303 gatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||   |||| ||||||||| ||||||| |||| |||| |||||||||||||||||    
T  25024596 gatgatgttgataagtttcggacattcaccacaaagaggtctcagaaagggcatttacctcctaat 25024661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 23804669 - 23804625
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacacc 278  Q
    ||||||||| |||||||||||||||| ||| |||||| |||||||    
T  23804669 aagatcaacgatgtgtggttcaatgacttgttgatatattacacc 23804625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 15771 - 15952
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||| |||||||    
T  15771 aaagagctttttcagcaatgaagattatcaagactaaattgcgcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcggga 15870  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  15871 gatattcaaatcacttgatgacattgatattattcgaacattcaccgcaaagaaatctcggaaagggcatttacctcctaat 15952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 34526309 - 34526490
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||| |||||||    
T  34526309 aaagagctttttcagcaatgaagattatcaagactaaattgcgcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcggga 34526408  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  34526409 gatattcaaatcacttgatgacattgatattattcgaacattcaccgcaaagaaatctcggaaagggcatttacctcctaat 34526490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 22464627 - 22464808
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||| |||||||    
T  22464627 aaagagctttttcagcaatgaagattatcaagactaaattgcgcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcggga 22464726  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||| |||||||||||  |||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||||    
T  22464727 gatattcaaatcacttgatgacattgatattattcaaacattcaccgcaaagaaatctcgaaaagggcatttacctcctaat 22464808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 22483506 - 22483687
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||  ||||| ||||| |||||||||||||||||| |||||||    
T  22483506 aaagagctttttcagcaatgaagattatcaagactaaattgcgcaacaagattaacaatgaatggttaaatgacttgatgatatgttacaccgagcggga 22483605  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  22483606 gatattcaaatcacttgatgacattgatattattcgaacattcaccgcaaagaaatctcggaaagggcatttacctcctaat 22483687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 33453406 - 33453225
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgtt-acaccaagcggg 285  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||| || || ||||||| ||||| ||||||    
T  33453406 aaagagctttttcaacaatgaagattatcaagtctaaactgcgcaacaagatcaacgatgtgtggt-caatgacttcatcatatgtttacaccgagcggg 33453308  T
Q  286 agatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || ||||  ||||||||||||||||    
T  33453307 agatatttaagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtatcagaaagagcatttacctcctaat 33453225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 35649876 - 35649697
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||| ||| |||||||||   | ||||||||| |||||| ||||||||| |||||||||||||||||| |||||||    
T  35649876 aaagagctttttcagcaatgaagattataaagactaaattgcc--agaagatcaacgatgtgttgttcaatgacttgatgatatgttacaccgagcggga 35649779  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||| |||||||||||||| ||| | ||||||| |||||||    
T  35649778 gatattcaagtcatttgatgatgttgatattattgaaacattcactgcaaagagatctcgaaaaggacatttacttcctaat 35649697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 221 - 368
Target Start/End: Complemental strand, 19952015 - 19951868
Alignment:
Q  221 taaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattatt 320  Q
    |||||||||||| ||||| ||| |||| ||||||||||| |||| ||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||    
T  19952015 taaattgcgcaacaagattaacgatgtatggttcaatgacttgacgatatgtcacactgagcgagagatattcaagtcacttgatgatgttgatattatt 19951916  T
Q  321 cgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||| ||||| ||| ||||||||||| |||||    
T  19951915 cgaacattcaccgcaaagaggtctcgaaaagggcatttaccttctaat 19951868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 19952223 - 19952052
Alignment:
Q  17 attttgcacatgtttttgttattttgcacatagcctgcatgaggtggaatttcatgtgttaaatcaaacttattatattatatgggatttcatgtgaaat 116  Q
    ||||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||| |||  ||||| ||||||||||||||||| ||||||||||    
T  19952223 attttgcacatctttttgttattttgtacattgcctacatgaggtggaatttcatgtgtt-aatagaacttgttatattatatgggattacatgtgaaat 19952125  T
Q  117 tgtgaatcatcataataagtgtgat---tagtatcaactatcaagcatgaaactattatttccaactatatttaa 188  Q
    ||||||||||||||||  |||||||   ||||||||| |||||||  |||| ||||| |||||||||||||||||    
T  19952124 tgtgaatcatcataat--gtgtgattactagtatcaattatcaagtctgaacctattctttccaactatatttaa 19952052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 12539578 - 12539711
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||| |||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12539578 aagatcaacaatgcgtggttcaatgacttgatgatatgtta-accgagcataagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 12539676  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| ||| |||||   |||||||||||||||    
T  12539677 caaagaggtcttggaaagaacatttacctcctaat 12539711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 261 - 350
Target Start/End: Original strand, 13308747 - 13308836
Alignment:
Q  261 ttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaa 350  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  13308747 ttgatgatatgttacaccgagcgagagatattcaagtcacttgatgatgttgatattattcgaacattcaccataaagaggtctcggaaa 13308836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 33453934 - 33453809
Alignment:
Q  17 attttgcacatgtttttgttattttgcacatagcctgcatgaggtggaatttcatgtgttaaatcaaacttattatattatatgggatttcatgtgaaat 116  Q
    ||||||||||| | ||||||||||||  ||| |||||||||||||||||||||| ||||||| ||||| || |||| |||||||||||||||||| ||||    
T  33453934 attttgcacatctatttgttattttgtgcattgcctgcatgaggtggaatttcacgtgttaa-tcaaatttgttattttatatgggatttcatgtaaaat 33453836  T
Q  117 tgtgaatcatcataataagtgtgatta 143  Q
    ||||||| ||||||||| || ||||||    
T  33453835 tgtgaattatcataatatgtatgatta 33453809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 34317638 - 34317510
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||  |||||||||||||||| |||||||||||||||||| ||   |||||||||||||||||| |||||||||||||| |||      ||||||    
T  34317638 aagatcaatgatgtgtggttcaatgacttgatgatatgttacaccgagtaagagatattcaagtcacttcatgatgttgatattgttc------tcaccg 34317545  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| ||||  |||  ||||||||||||||||    
T  34317544 caaagaggtctcaaaaagagcatttacctcctaat 34317510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 18426072 - 18425998
Alignment:
Q  294 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||| ||||  ||| |  ||||||||||||||    
T  18426072 aagtcacttgataatgttgatattattcgaacattcaccgtaaagaggtctcaaaaatgttatttacctcctaat 18425998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 26656452 - 26656401
Alignment:
Q  294 aagtcacttgatgat-gttgatattattcgaacattcaccgcaaagagatct 344  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  26656452 aagtcacttgacgattgttgatattattcgaacattcaccgcaaagagatct 26656401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 371
Target Start/End: Original strand, 34907624 - 34907726
Alignment:
Q  269 atgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||| | || |||||| ||| ||||||||||| ||||||||| |||| |||||||| || | |||  | ||| ||| |||||||||||||||||    
T  34907624 atgttacaccgaacgagagatactcaggtcacttgatggtgttgatataattcaaacattcatcggagagaagtttcgaaaagggcatttacctcctaat 34907723  T
Q  369 att 371  Q
    |||    
T  34907724 att 34907726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 31392485 - 31392538
Alignment:
Q  315 attattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||| ||| ||||||| ||||| ||| |||||||||||| ||||    
T  31392485 attattcgaacatttacctcaaagaggtctcgaaaagggcatttacctcttaat 31392538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 9844997 - 9844961
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaa 223  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  9844997 aaagatctttttcagcaatgaaaattatcaagtctaa 9844961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 45121334 - 45121370
Alignment:
Q  332 cgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  45121334 cgcaaagaggtctcggaaaagacatttacctcctaat 45121370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 186 - 368
Target Start/End: Complemental strand, 16532850 - 16532668
Alignment:
Q  186 taaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggg 285  Q
    ||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||| |||||||||||||||| |||||||||||||| |||||| | |    
T  16532850 taaagagctttttcagcaatgaagattatcaagactaaattacacaacaagatcaacgatgtgtggttcaatgacttgatgatatgttataccaagtgag 16532751  T
Q  286 agatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||    
T  16532750 agatattcaagtcacttgatgatgttgatattattcaaacattcaccgcaaagagatatcggaaagggcatttacctcctaat 16532668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 30791676 - 30791495
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||| |||||||    
T  30791676 aaagagctttttcagcaatgaagattatcaagattaaattgcgcaacaagatcaagaatgagtggttcaatgacttgatgatatgttacaccgagcggga 30791577  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  30791576 gatattcaagtcacttgatgacattgatattattcgaacattcaccgcaaagaggtctcggaaagggcatttaccacctaat 30791495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 21958469 - 21958650
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||||||||| ||| |||    
T  21958469 aaagagctttttcaccaatgaagattatcaagactaaattacgcaacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcagga 21958568  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||   |||||| || |||||| || ||||||||||||||    
T  21958569 gatattcgagtcacttgatgatgttgatattattcgaacattaactcaaaagaggtcgcggaaagggaatttacctcctaat 21958650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 14446836 - 14446970
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  14446836 aagatcaacgatttgtggttcaatgacttgatgatatgttacaccaagagagagatattcaagtcacttgatgatgttgatattattctaacattcactg 14446935  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| ||||||||| | |||| ||||||||||    
T  14446936 caaagaggtctcggaaaggacattcacctcctaat 14446970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 27190775 - 27190909
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  27190775 aagatcaacgatgtgtggttcaatgacttgatgatatgttgcacctagcgggagatattcaagtcacttgatgatgttgatattactcgaatattcaccg 27190874  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||  |||| |||| | |||||||||||||||    
T  27190875 caaagatgtctcagaaaggacatttacctcctaat 27190909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 236 - 368
Target Start/End: Complemental strand, 13152563 - 13152431
Alignment:
Q  236 gatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgca 335  Q
    |||||||  ||||||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||||| |||||||| ||||    
T  13152563 gatcaacgctgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcatttgatgatgttggtattattccaacattcatcgca 13152464  T
Q  336 aagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||| ||||||||| |||||||||||||||||    
T  13152463 aagaggtctcggaaagggcatttacctcctaat 13152431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 230 - 368
Target Start/End: Original strand, 9256389 - 9256527
Alignment:
Q  230 caataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 329  Q
    ||||| ||||||  |||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9256389 caatatgatcaatgatgtgtggtttaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataattcgaacattc 9256488  T
Q  330 accgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    | ||||||||| ||||| ||| | |||||||||||||||    
T  9256489 atcgcaaagaggtctcgcaaatgacatttacctcctaat 9256527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 28846625 - 28846726
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||||||||||||| |||||||| |   ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28846625 aagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 28846721  T
Q  334 caaag 338  Q
    |||||    
T  28846722 caaag 28846726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 269 - 368
Target Start/End: Complemental strand, 10014571 - 10014472
Alignment:
Q  269 atgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| | ||||| |||||||||||||||||    
T  10014571 atgttacaccgagcggaagatattcatgtcacttgatgatgttgatattattcaaacattcaccggaaagagattttggaaagggcatttacctcctaat 10014472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 363
Target Start/End: Original strand, 24333718 - 24333850
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaac---attca 330  Q
    ||||||||| |||| || |||||||| || ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||   |||||    
T  24333718 aagatcaacgatgtatgattcaatgactttatgatatgttacactgagcgggagatattcaagtcacttgatgatgttaatattattcgaacattattca 24333817  T
Q  331 ccgcaaagagatctcggaaaaggcatttacctc 363  Q
    || ||||||| |||||||||  | |||||||||    
T  24333818 ccacaaagaggtctcggaaagagaatttacctc 24333850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 10467786 - 10467861
Alignment:
Q  252 ttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacat 327  Q
    |||||||| |||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||    
T  10467786 ttcaatgacttgatgatatgttacatcgagcgggagataatcaagtcatttgatgatgttgatattattcgaacat 10467861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 32372022 - 32372096
Alignment:
Q  294 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| | |||||||||||||||    
T  32372022 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtctcaaaaaggtcatttacctcctaat 32372096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 32359486 - 32359560
Alignment:
Q  294 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||| | |||||||||||||||    
T  32359486 aagtcacttgatgatgttgatattattcgaacattcactgcaaagaggtctcaaaaatgtcatttacctcctaat 32359560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 40146116 - 40146047
Alignment:
Q  299 acttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||||||| ||||| |||||||||||    
T  40146116 acttgatgatgttgatattattcgaacattcacaacaaagaggtctcggaaatggcatctacctcctaat 40146047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 32342880 - 32342954
Alignment:
Q  294 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||||||||||||||||||||| ||||| || ||||  ||| | |||||||||||||||    
T  32342880 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaat 32342954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 368
Target Start/End: Original strand, 32355367 - 32355441
Alignment:
Q  294 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||||||||||||||||||||| ||||| || ||||  ||| | |||||||||||||||    
T  32355367 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaat 32355441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 34228338 - 34228269
Alignment:
Q  296 gtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcct 365  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| ||| |||||  |||||||||||||    
T  34228338 gtcacttgatgatgttgatattattcgaacatttaccacaaagaggtcttggaaattgcatttacctcct 34228269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 42446935 - 42447015
Alignment:
Q  247 tgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacat 327  Q
    ||||||| |||||  |||| |||||||||| | ||||| |||||||||||||||||||||| ||| |||||||| ||||||    
T  42446935 tgtggttgaatgacgtgattatatgttacatcgagcggaagatattcaagtcacttgatgacgtttatattatttgaacat 42447015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 2826407 - 2826368
Alignment:
Q  301 ttgatgatgttgatattattcgaacattcaccgcaaagag 340  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  2826407 ttgataatgttgatattattcgaacattcaccgcaaagag 2826368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 34228995 - 34228921
Alignment:
Q  117 tgtgaatcatcataataagtgtgatta---gtatcaactatcaagcatgaaactattatttccaactatatttaa 188  Q
    |||||||||||||||||  |||| |||   |||||||||||||| | |||| ||||| |||||||||||||||||    
T  34228995 tgtgaatcatcataatatttgtggttactagtatcaactatcaaacctgaacctattctttccaactatatttaa 34228921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 187 - 360
Target Start/End: Original strand, 27364840 - 27365013
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||| |||||||    
T  27364840 aaagagctttttcagcaatgaagattatcaagactaaattgcgcaacaagatcaacagtgtgtggttaaatgacttgatgatatgttacaccgagcggga 27364939  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttac 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||||    
T  27364940 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgaaaagaggtctcgaaaagggcatttac 27365013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 55464878 - 55464697
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||    
T  55464878 aaagagctttttcagcaatgaagattatcaagactaaattgcgcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcggga 55464779  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    || | ||||||||||||||||||||||||||||||||||||||||   ||||||    || ||||||||| |||||||||||    
T  55464778 gaaaatcaagtcacttgatgatgttgatattattcgaacattcactcgaaagaggctacgaaaaaggcatctacctcctaat 55464697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 31944620 - 31944754
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||||||||||||| |||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31944620 aagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgtgagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 31944719  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| ||||||||| |||||||||||||||||    
T  31944720 caaagaggtctcggaaagggcatttacctcctaat 31944754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 236 - 368
Target Start/End: Complemental strand, 53693203 - 53693071
Alignment:
Q  236 gatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgca 335  Q
    |||||||  ||||||||||||||| |||||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||    
T  53693203 gatcaacggtgtgtggttcaatgacttgatgatatgttacatcgagcgggagataatcaaggcacttgatgatgttgatattattcgaacattcatcgca 53693104  T
Q  336 aagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||| ||||||||| |||||| ||||| ||||    
T  53693103 aagaggtctcggaaagggcattcacctcttaat 53693071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 12211827 - 12211641
Alignment:
Q  17 attttgcacatgtttttgttattttgcacatagcctgcatgaggtggaatttcatgtgttaaa-------tcaaacttattatattatatgggatttcat 109  Q
    ||||||||||| |||||||||||||| |||||| |||  ||||||||||||||||||||| ||       |  ||||| ||||||||||||| |||||||    
T  12211827 attttgcacatctttttgttattttgtacatagtctgtgtgaggtggaatttcatgtgttcaactgttaatagaacttgttatattatatggaatttcat 12211728  T
Q  110 gtgaaattgtgaatcatcataataagtgtgat---tagtatcaactatcaagcatgaaactattatttccaactatatttaaagagc 193  Q
    |||||||||||||||||||| ||| |||||||   ||||||||||||||||||||||| || || ||||||||||||||||| ||||    
T  12211727 gtgaaattgtgaatcatcattatatgtgtgattactagtatcaactatcaagcatgaaccttttctttccaactatatttaatgagc 12211641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 229 - 368
Target Start/End: Complemental strand, 12211402 - 12211263
Alignment:
Q  229 gcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 328  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||    
T  12211402 gcaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgaacaggagatattcaagtcatttgatgatgttgatattattcgaacatt 12211303  T
Q  329 caccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||   ||| ||| ||||| ||| | |||||||||||||||    
T  12211302 catttcaatgaggtctcgaaaatgacatttacctcctaat 12211263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 42843686 - 42843817
Alignment:
Q  209 gattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgat 308  Q
    |||||| ||| |||||||| |||| |||||||||||||||||||| ||||| |||||||||||||| |   || | ||||||||||||||||||||||||    
T  42843686 gattattaagactaaattgtgcaacaagatcaacaatgtgtggtttaatgagttgatgatatgttatattgagtgagagatattcaagtcacttgatgat 42843785  T
Q  309 gttgatattattcgaacattcaccgcaaagag 340  Q
    |||||||||| ||||||||||||| |||||||    
T  42843786 gttgatattaatcgaacattcaccacaaagag 42843817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 4325416 - 4325549
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||||||||||||| |||||||||||||||||| || |||||||| ||||  ||||||||||||||||||||||| |||||||||| |    
T  4325416 aagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgggagataatcaacccacttgatgatgttgatattatttgaacattcacag 4325515  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    || | |  |||| |||| |||| ||||||||||||    
T  4325516 caga-atgtctcagaaagggcaattacctcctaat 4325549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 280 - 368
Target Start/End: Original strand, 3074419 - 3074507
Alignment:
Q  280 agcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| | || |||||||| ||||||||    
T  3074419 agcgggagataatcaagtcacttgatgatgttgatattatttgaacattcatcgcaaagaggtctcaggaagggcatttatctcctaat 3074507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 3240385 - 3240311
Alignment:
Q  294 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |  |||| |||||||||    
T  3240385 aagttacttgatgatgttgataatattcgaatattcaccgcaaagagatctcgaaaatgttatttgcctcctaat 3240311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 8898037 - 8897963
Alignment:
Q  294 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||    ||||||||||||||    
T  8898037 aagtcactggatgatgttgatattattcgagcattcaccgcaaagaggtctcagaaagactatttacctcctaat 8897963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 10632757 - 10632681
Alignment:
Q  294 aagtcacttgatgatgttgatattattcgaaca--ttcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||| || |||||||||||  |||||||||||||  |||||||||   |||||||||||||||    
T  10632757 aagtcacttgatgatgttaatgttattcgaacattttcaccgcaaagaagtctcggaaatatcatttacctcctaat 10632681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 374
Target Start/End: Original strand, 1147584 - 1147643
Alignment:
Q  315 attattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaatattctt 374  Q
    ||||||||||||||||  |||||||| |||||||||  | |||||||||||||| |||||    
T  1147584 attattcgaacattcattgcaaagaggtctcggaaagagtatttacctcctaattttctt 1147643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 31988986 - 31989167
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||    
T  31988986 aaagagctttttcagcaatgaagattattaagactaaattgcgcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcggga 31989085  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||| || |||||| |||||||||||||||||    
T  31989086 gatattcaagtcacttgatgatgttgatattattcgaacattcactcgaaagaggtcgcggaaagggcatttacctcctaat 31989167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 43137084 - 43137264
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||| |||||||    
T  43137084 aaagagcttttttagcaatgaagattatcaactctaaattgcgcaacaagatcaacgatgtatggttcaatgacttgatgatatgttacaccgagcggga 43137183  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| ||||||| ||||||||||||||    
T  43137184 gatattcaagtcacttgatgatgttgatattattcgaacattcgccgc-aagaggtctcagaaaaggtatttacctcctaat 43137264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 53710355 - 53710536
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||| ||||| |||||||| ||||||||| |||||||    
T  53710355 aaagagctttttcagcaatgaagattatcaagactaaattgcgcaacaagatcaacaatggatggttgaatgacttgatgatctgttacaccgagcggga 53710454  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||| || |||||| |||||||||||||||||    
T  53710455 gatattcaagtcacttgatgatgttgatattattcgaacattcactcgaaagaggtcacggaaagggcatttacctcctaat 53710536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 24908611 - 24908430
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| |||    
T  24908611 aaagagctttttcagcaatgaagattatcaagagtaaattgcgcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccaagcagga 24908512  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||   |||||| || |||||| || ||||||||||||||    
T  24908511 gatattcaagtcgcttgaagatgttgatattattcgaacattcactcgaaagaggtcgcggaaagggtatttacctcctaat 24908430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 37382087 - 37381906
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||| | |||||||| ||||||  |||  ||    
T  37382087 aaagagctttttcagcaatgaagattatcaagtctaaatttcgcaacaagatcaacgatgtgtggttaaatgactcgatgatatattacactgagcatga 37381988  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||| | ||||| |||||||||    
T  37381987 gatattcaagtcatttgatgatgtttatattattcgaacattcactgcaaagaggtctcggaaatgacatttgcctcctaat 37381906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 15667977 - 15668111
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||  |||||||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  15667977 aagatcaaggatgtgtggttcaataacttgatgatatgttataccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatgcacaa 15668076  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| | |||||||||||||||||||||||||    
T  15668077 caaagaggtatcggaaaaggcatttacctcctaat 15668111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 51261983 - 51262117
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| | ||||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51261983 aagatcaacgaagtgtggtacaatgaattgatgatatgttacactaagcggaagatattcaagtcacttgatgatgttgatattattcgaacattcatcg 51262082  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
     |||||| ||| | |||   |||||||||||||||    
T  51262083 taaagaggtcttgaaaagaacatttacctcctaat 51262117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 43136298 - 43136471
Alignment:
Q  17 attttgcacatgtttttgttattttgcacatagcctgcatgaggtggaatttcatgtgttaaatcaaacttattatattatatgggatttcatgtgaaat 116  Q
    ||||||||||| |||||||||||||| ||||  || ||  ||||| |||||||||||| ||| || ||||| ||||||||||| ||||||||||||||||    
T  43136298 attttgcacatctttttgttattttgtacattaccggctcgaggtcgaatttcatgtgctaa-tcgaacttgttatattatataggatttcatgtgaaat 43136396  T
Q  117 tgtgaatcatcataataagtgtgat---tagtatcaactatcaagcatgaaactattatttccaactatatttaa 188  Q
    ||| ||||||||||||| |||||||   ||||||||| |||||||| ||||  |||| |||||||||||||||||    
T  43136397 tgttaatcatcataatacgtgtgattactagtatcaattatcaagcctgaatttattctttccaactatatttaa 43136471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 3857047 - 3856913
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||||||| ||||| ||||||| ||||||| |  || ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  3857047 aagatcaacgatgtgtggttaaatgacttgatgacatgttactcagagtgggagatattcaagtcatttgatgatgttgatattattcaaacattcaccg 3856948  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| |||| ||||    ||||||||||||||    
T  3856947 caaagaggtctcagaaagaaaatttacctcctaat 3856913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 22934910 - 22934836
Alignment:
Q  294 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||| ||||    
T  22934910 aagtcacttgatgatgttgatattattagaacattcaccgcaaagaggtctcggaaaggtcatttacctcttaat 22934836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 37382672 - 37382556
Alignment:
Q  17 attttgcacatgtttttgttattttgcacatagcctgcatgaggtggaatttcatgtgttaaatcaaacttattatattatatgggatttcatgtgaaat 116  Q
    ||||| ||||| |||||||||||||| |||| | | || ||| ||||||||||||||||| | || ||||| |||||||||||| |||||||| ||||||    
T  37382672 attttacacatctttttgttattttgtacattgtcggcgtgaagtggaatttcatgtgttga-tcgaacttgttatattatatgagatttcatatgaaat 37382574  T
Q  117 tgtgaatcatcataataa 134  Q
    || |||||||||||||||    
T  37382573 tgggaatcatcataataa 37382556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 368
Target Start/End: Complemental strand, 24988917 - 24988850
Alignment:
Q  301 ttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||    
T  24988917 ttgatgatgttgatattattcgaacattcaccgcaaagaggtctcggaaagggcatgtatctcctaat 24988850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 43585836 - 43585908
Alignment:
Q  249 tggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattc 321  Q
    ||||| ||||| |||||||||||||||||| |||||||||||| ||||| |||||| |||||| |||||||||    
T  43585836 tggttgaatgacttgatgatatgttacaccgagcgggagatatccaagttacttgacgatgttaatattattc 43585908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 259875 - 260056
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| | |||||||    
T  259875 aaagagttttttcagcaatgaagattatcaagactaaattgcgcaacaagatcaacaatgagtggttcaatgacttgatgatatgttacatcgagcggga 259974  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
     ||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  259975 tatattcaagtcacttgatgacattgatattattcgaacattcaccgcaaagaggtctcggaaatggcatttaccacctaat 260056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 21974006 - 21973825
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||| |||||| |||||||||||||||||||||||  |||||||    
T  21974006 aaagagctttttcagcaatgaagattatcaagactaaattgtgcaacaagattaacaatgagtggttaaatgatttgatgatatgttacactgagcggga 21973907  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  21973906 gatattcaaatcacttgatgacattgatattattcgaacattcaccgcaaagaaatctcggaaagggcatttacctcctaat 21973825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 187 - 331
Target Start/End: Original strand, 17127396 - 17127540
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||    
T  17127396 aaagagctttttcaacaatgaagattatcaagactaaattgcgcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcggga 17127495  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcac 331  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  17127496 gatattcaagtcgcttgatgatgttgatattattcgaacattcac 17127540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 9637125 - 9637259
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||  ||| |||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  9637125 aagatcaatgatgcgtggttcaatgacttgatgatatgttacaccgagcgggtgatattcaagtcacttgatgatgttgatattatttgaacattcaccg 9637224  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| ||||||||| ||||||||| |||||||    
T  9637225 caaagaggtctcggaaagggcatttacatcctaat 9637259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 26273317 - 26273145
Alignment:
Q  17 attttgcacatgtttttgttattttgcacatagcctgcatgaggtggaatttcatgtgttaaatcaaacttattatattatatgggatttcatgtgaaat 116  Q
    ||||||||||| |||||||||||||| || | |||||| ||||||||||||||||||||||| |  ||||| |||||||||||| |||| ||||||||||    
T  26273317 attttgcacatctttttgttattttgtacct-gcctgcgtgaggtggaatttcatgtgttaa-tagaacttgttatattatatgagattacatgtgaaat 26273220  T
Q  117 tgtgaatcatcataataagtgtgatta---gtatcaactatcaagcatgaaactattatttccaactatatttaa 188  Q
    ||||||||||||||||| |||||||||   |||||||||||||||| |||| ||||| |||||||||||||||||    
T  26273219 tgtgaatcatcataatatgtgtgattattggtatcaactatcaagcctgaacctattctttccaactatatttaa 26273145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 25017390 - 25017524
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||||||||||||| |||||||||| ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  25017390 aagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgagcgagagatattcaaatcacttgatgatgttgatattattcgaacgttcaccg 25017489  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| |||| |||| ||||| |||||||||||    
T  25017490 caaagaggtctcagaaagggcatatacctcctaat 25017524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 221 - 368
Target Start/End: Complemental strand, 26273113 - 26272966
Alignment:
Q  221 taaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattatt 320  Q
    |||||||||||| || |||||| |||||| |||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||||||| ||||||||    
T  26273113 taaattgcgcaacaaaatcaacgatgtgttgttcaatgatttgatgatatgttacatcgagcaggagatattcaagtcacgtgatgatgttaatattatt 26273014  T
Q  321 cgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||| |||||| || ||||||||| |||| |||||| |||||    
T  26273013 cgaacattcatcgcaaacaggtctcggaaagggcaattacctactaat 26272966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 48606783 - 48606649
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||    
T  48606783 aagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtaacttgataatgttgatattattcaaacactcaccg 48606684  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| |||  |||| |||||||||||| ||||    
T  48606683 caaagaggtcttcgaaagggcatttacctcataat 48606649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 255 - 368
Target Start/End: Complemental strand, 35949128 - 35949015
Alignment:
Q  255 aatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggc 354  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| | |    
T  35949128 aatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatgttattcgaacattcaccgaaaagaggtctcggaaaggac 35949029  T
Q  355 atttacctcctaat 368  Q
    ||||||||||||||    
T  35949028 atttacctcctaat 35949015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 30559176 - 30559042
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30559176 aagatcaacgatgtgtggttctatgacttgatgatatgttacaccgagcgagagatattcaagtcacttgatgatgctgatattattcgaacattcaccg 30559077  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
     ||| |||||||  ||| |  ||||||||||||||    
T  30559076 taaatagatctcataaatgatatttacctcctaat 30559042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 40864890 - 40864756
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||||||||||||| |||||||||| ||||||| | || | ||||||||||||||||||| |||||||||||||||||||||||||||    
T  40864890 aagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgaacgagggatattcaagtcacttgataatgttgatattattcgaacattcaccg 40864791  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| | |  |||| |||||||||||||||||    
T  40864790 caaagaggttttagaaagggcatttacctcctaat 40864756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 236 - 368
Target Start/End: Complemental strand, 52753986 - 52753857
Alignment:
Q  236 gatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgca 335  Q
    ||||||| |||||||||||||||| |||||||||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||||   ||||    
T  52753986 gatcaacgatgtgtggttcaatgacttgatgatatgttacatcgaacgggagatattcaagtcatttgatgatgttgatattattcgaacatt---cgca 52753890  T
Q  336 aagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||| ||||||||| || ||||||||||||||    
T  52753889 aagaggtctcggaaagggtatttacctcctaat 52753857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 236 - 368
Target Start/End: Original strand, 14498904 - 14499035
Alignment:
Q  236 gatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgca 335  Q
    ||||||| || |||||| |||||| |||||||||| ||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  14498904 gatcaacgatttgtggt-caatgacttgatgatatcttacatcgagcgggagatattcaagtcatttgatgatgttgatattattcgaacattcatcgca 14499002  T
Q  336 aagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||| |||| |||| | |||||||||||||||    
T  14499003 aagaggtctcagaaaggacatttacctcctaat 14499035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 32380023 - 32379893
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||||||||||||| |||||   |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | ||    
T  32380023 aagatcaacgatgtgtggttcaatgacttgat---atgttacaccaaacgggagatattcaattcacttgatgatgttgatattattcgaacattta-cg 32379928  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| | ||| ||| | |||||||||||||||    
T  32379927 caaagaggtatcgaaaatgacatttacctcctaat 32379893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 30054855 - 30054959
Alignment:
Q  264 atgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctc 363  Q
    ||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||| ||| |||||||||| | ||  ||| | ||||||||||    
T  30054855 atgatatgttacaccgagcgggagatattcaagtcacttgatcatattgacattattcgaaccttctccgcaaagaggtatcataaatgacatttacctc 30054954  T
Q  364 ctaat 368  Q
    |||||    
T  30054955 ctaat 30054959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 17874845 - 17874916
Alignment:
Q  297 tcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| ||||| |||   ||||||||| |||||    
T  17874845 tcactggatgatgttgatattattcaaacattcaccgcaaagaggtctcgaaaagatcatttaccttctaat 17874916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 187 - 368
Target Start/End: Original strand, 197062 - 197243
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||| ||||| |||||||||||||||||| |||||||    
T  197062 aaagagctttttcagcaatgaagattatcaagactaaattgcgcaacaagattaacaatgagtggttaaatgaattgatgatatgttacaccgagcggga 197161  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||||| |||||||||||  |||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||||    
T  197162 gatattcaaatcacttgatgacattgatattattcaaacattcaccgcaaagaaatctcgaaaagggcatttacctcctaat 197243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 184 - 368
Target Start/End: Original strand, 24074366 - 24074550
Alignment:
Q  184 tttaaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcg 283  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||  ||||| |||||||||||||||||| || |    
T  24074366 tttaaagagctttttcagcaatgaagattgtgaagactaaattgcgcaacaagatcaacaatgtgtggtaaaatgacttgatgatatgttacaccgaggg 24074465  T
Q  284 ggagatattcaagtcacttgatgatgttgatattattcgaacattc-accgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||| || | |||||||||||||||    
T  24074466 ggagatattcaagttacttgatgatgttgatattattcgaacattcaaccggaaagaggtctcgg-aatgacatttacctcctaat 24074550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 12180696 - 12180562
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    |||||||||| ||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12180696 aagatcaacattgtgtggttcaatgacttgatgatatgttacaccgagtgggagaaattcaagtcacttgatgttgttgatattattcgaacattcaccg 12180597  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| |||||| || ||||||||||| |||||    
T  12180596 caaagaggtctcgggaagggcatttaccttctaat 12180562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 230 - 368
Target Start/End: Original strand, 11970960 - 11971097
Alignment:
Q  230 caataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 329  Q
    ||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||||||    
T  11970960 caataagatcaacgatgtgtggttcaatgacttgatcatatgttacaccgagcggaagatattcaagtcacttgatgatgttgatattttgcgaacattc 11971059  T
Q  330 accgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||| |||||| |||| |||| |||||||||||||||||    
T  11971060 accg-aaagaggtctcagaaagggcatttacctcctaat 11971097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 25340449 - 25340583
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||  ||||||| || | |||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||||||||||||||||     
T  25340449 aagatcaatgatgtgtgattaagtgatttgatgatatgttacacccagtggaagatatttaagtcacttgatgatgttgatattattcgaacattcacca 25340548  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
     |||||| |||| ||||  ||||||||||||||||    
T  25340549 taaagaggtctcagaaagtgcatttacctcctaat 25340583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 368
Target Start/End: Original strand, 3050902 - 3051001
Alignment:
Q  269 atgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||  ||||||||| ||||||    
T  3050902 atgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcaaacattcaccggaaagaggtctcggaaagagcatttaccacctaat 3051001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 237 - 368
Target Start/End: Original strand, 25599159 - 25599293
Alignment:
Q  237 atcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacat---tcaccg 333  Q
    |||||| | ||| |||||||||| |||||| ||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||||   ||| ||    
T  25599159 atcaacgacgtgcggttcaatgacttgatggtatgttacatcgagtgggagataatcaagtcacttgatgatgttgatattattcgaacattcatcatcg 25599258  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| ||||||||| ||||||||| |||||||    
T  25599259 caaagaggtctcggaaagggcatttacgtcctaat 25599293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 283 - 368
Target Start/End: Original strand, 30621226 - 30621310
Alignment:
Q  283 gggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | |||||||||||||||    
T  30621226 gggagataatcaagtcacttgatgatgttgatattattcgaacattcatcg-aaagaggtctcggaaaggacatttacctcctaat 30621310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 368
Target Start/End: Complemental strand, 32442132 - 32442011
Alignment:
Q  244 atgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatc 343  Q
    |||||||||||||||| || ||||||||||||| | ||||| ||||| | |  |||||||||||||||||||||||||||||||||| | ||||||| |     
T  32442132 atgtgtggttcaatgactt-atgatatgttacatcgagcggaagataataa--tcacttgatgatgttgatattattcgaacattcatcccaaagaggta 32442036  T
Q  344 tcggaaaaggcatttacctcctaat 368  Q
    ||||||| |||||||||||| ||||    
T  32442035 tcggaaagggcatttacctcttaat 32442011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 365
Target Start/End: Original strand, 1296559 - 1296644
Alignment:
Q  280 agcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcct 365  Q
    ||||||||||||||||||||||||||||| || ||||||||| || ||||||   |||||| ||||||||| | ||||||||||||    
T  1296559 agcgggagatattcaagtcacttgatgatattaatattattcaaatattcacaataaagaggtctcggaaaggccatttacctcct 1296644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 10895238 - 10895202
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaa 223  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  10895238 aaagatctttttcagcaatgaaaattatcaagtctaa 10895202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 187 - 368
Target Start/End: Complemental strand, 214379 - 214198
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaaattgcgcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcggga 286  Q
    |||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||||||||| ||| |||    
T  214379 aaagagctttttcaccaatgaagattatcaagactaaattacgcaacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcagga 214280  T
Q  287 gatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||   |||||| || |||||| || ||||||||||||||    
T  214279 gatattcgagtcacttgatgatgttgatattattcgaacattaactcaaaagaggtcgcggaaagggaatttacctcctaat 214198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 17744 - 17878
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 333  Q
    ||||||||| |||||||||||||||| ||||||||| |||||| | ||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  17744 aagatcaacgatgtgtggttcaatgacttgatgatacgttacatcgagcgggagatatttaagtcacttgctgatgttgatattattcgaacattcaccg 17843  T
Q  334 caaagagatctcggaaaaggcatttacctcctaat 368  Q
    ||||||| |||| |||| | |||||| ||||||||    
T  17844 caaagaggtctccgaaaggacatttaactcctaat 17878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 264 - 368
Target Start/End: Original strand, 1430 - 1534
Alignment:
Q  264 atgatatgttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctc 363  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| ||||||||| ||||||| ||||    
T  1430 atgatatgttacaccgagcgggagatattcaaatcacttgatgatgttgatattattcgaacattcattgcaaagaggtctcggaaatggcatttgcctc 1529  T
Q  364 ctaat 368  Q
    |||||    
T  1530 ctaat 1534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 234 - 368
Target Start/End: Complemental strand, 435526 - 435385
Alignment:
Q  234 aagatcaacaatgtgtggttcaatgatttgatgatatg-----ttacaccaagcgggagatattcaagtcacttgatgatgttgatattattcgaac--a 326  Q
    |||||||| ||||||||| ||||||| |||||||||||     ||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||  |    
T  435526 aagatcaataatgtgtggctcaatgacttgatgatatgatatgttacaccgagcggaagatattcaagtcacttgattatgttgatattattagaacata 435427  T
Q  327 ttcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    || ||||| ||||| ||||| ||| | |||||||||||||||    
T  435426 ttaaccgcgaagaggtctcgaaaaggacatttacctcctaat 435385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 368
Target Start/End: Original strand, 954 - 1021
Alignment:
Q  301 ttgatgatgttgatattattcgaacattcaccgcaaagagatctcggaaaaggcatttacctcctaat 368  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||    
T  954 ttgatgatgttgatattattcgaacattcaccgcaaagaggtctccgaaagggcatttatctcctaat 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 12072 - 12036
Alignment:
Q  187 aaagagctttttcagcaatgaagattatcaagtctaa 223  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  12072 aaagatctttttcagcaatgaaaattatcaagtctaa 12036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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