View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14314_high_7 (Length: 369)
Name: NF14314_high_7
Description: NF14314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14314_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 330
Target Start/End: Original strand, 23619263 - 23619591
Alignment:
| Q |
6 |
aggtatagtctgaaaatttagatctataatctatgtatt----taatcacaaagacacagagttgttatgcctagatactatatgcaaacaacagttttg |
101 |
Q |
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||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
23619263 |
aggtatagtctcaaaatttgcatctataatctatgtattaatttaatcacaaagacacaaagttgttatgcctagatactatatgcaaaaaacagttttg |
23619362 |
T |
|
| Q |
102 |
cctaccacataagtgttcacaaagcttgaaagtgaagagacaacagattaaaaagagaaacttttgtccaaaagtgttaaaacatatgttctttttactt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
23619363 |
cctaccacataagtgttcacaaagcttgaaagtgaagagacaacagattaaaaagagaaacttttgtccaaaagtggtaaaacatatgttcttttcactt |
23619462 |
T |
|
| Q |
202 |
cactttattctggaaaatcttaataaaacatatttagaatctgatgtcagctttaattataataaagataaataaatagatataagcaaacaacatataa |
301 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23619463 |
cactttattctcgaaaatcttaataaaacatatttagaatctgatgtcagctttaattataataaagataaataaatagataaaagcaaacaacatataa |
23619562 |
T |
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| Q |
302 |
aaggattaagaatctatattccttcttaa |
330 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
23619563 |
aaggattaagaatctatattccttcttaa |
23619591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 23604804 - 23605041
Alignment:
| Q |
18 |
aaaatttagatctataatctatgtatttaatcacaaagacacagagttgttatgcctagatactatatgcaaaca-acagttttgcctaccacataagtg |
116 |
Q |
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||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||| | | |||| ||||| ||||||| ||||| |
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| T |
23604804 |
aaaatttgcatctataatctatctatttaatcacaaag--------ttattatgcctagatactatatgcctagatacagctttgcataccaca-aagtg |
23604894 |
T |
|
| Q |
117 |
ttcacaaagcttgaaagtgaagagacaacagattaaaaagagaaacttttgtccaaaagtgttaaaacatatgttctttttacttcactttattctggaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||| |
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| T |
23604895 |
ttcacaaagcttgaaagtgaagagacaacagattaaaaagagaaacttttgtccaaaaatgtgaaaacatatgttcttttcacttcactttattcatgaa |
23604994 |
T |
|
| Q |
217 |
aatcttaataaaacatatttagaatctgatgtcagctttaattataa |
263 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
23604995 |
aatcttaataaaacatatttagaatctgatgtttgttttaattataa |
23605041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 98 - 326
Target Start/End: Original strand, 23576964 - 23577189
Alignment:
| Q |
98 |
tttgcctaccacataagtgttcacaaagcttgaaagtgaagagacaacagattaaaaagagaaacttttgtccaaaagtgttaaaacatatgttcttttt |
197 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||||||| |
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| T |
23576964 |
tttgcataccacataagtgttcacaaagcttgaaagttaagagacaacatattaaaaagagaatcttttgtccaaaaataccaaaacatatgttcttttc |
23577063 |
T |
|
| Q |
198 |
acttcactttattctggaaaatcttaataaaacatatttagaatctgatgtcagctttaattataataaagat-aaataaatagatataagcaaacaaca |
296 |
Q |
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| T |
23577064 |
acttcactttattgttgaaaatcataataaaacatttttagaatctgatgtcagctttaatt---attaagataaaataaatagata-aataaaacaata |
23577159 |
T |
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| Q |
297 |
tataaaaggattaagaatctatattccttc |
326 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
23577160 |
tataaaaggcttaagaatctatattccttc |
23577189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 335
Target Start/End: Original strand, 23583682 - 23583939
Alignment:
| Q |
84 |
atgcaaacaacagttttgcctaccacataagtgttcacaaagcttgaaagtgaagagacaaca------gat----taaaaagagaaacttttgtccaaa |
173 |
Q |
| |
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||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||| | ||| || ||||||||||||||||||||| |
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| T |
23583682 |
atgcaaacaacagatttgcctaccgcataagtgtttacaaagcttgaaagtgaagagacaaaataaaaggatagcatataaagagaaacttttgtccaaa |
23583781 |
T |
|
| Q |
174 |
agtgttaaaacatatgttctttttacttcactttattctggaaaatcttaat-aaaacatatttagaatctgatgtcagctttaattataataaagataa |
272 |
Q |
| |
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| ||||||||||||||||| ||||||||||||||| | ||||||| || |||||||| |||||||||||||||||||||||||||| | | || |
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| T |
23583782 |
aacaccaaaacatatgttcttttcacttcactttattctag-aaatcttgataaaaacataaatagaatctgatgtcagctttaattataaaaca---aa |
23583877 |
T |
|
| Q |
273 |
ataaatagatataagcaaacaacatataaaaggattaagaatctatattccttcttaagggaa |
335 |
Q |
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||||| ||||| |||| || |||||||||| |||||||||||| |||||||| |||||| |
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| T |
23583878 |
ataaaaagataagtacaaa-aatatataaaaggcttaagaatctatggtccttctttagggaa |
23583939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 23606584 - 23606721
Alignment:
| Q |
126 |
cttgaaagtgaagagacaacagattaaaaagagaaacttttgtccaaaagtgttaaaacatatgttctttttacttcactttattctggaaaatcttaat |
225 |
Q |
| |
|
||||| |||||||||||| || ||||||||||||||||||||| || || | ||||||||||||||||| | ||| ||||||||| ||||||| | || |
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| T |
23606584 |
cttgagagtgaagagacagcaaattaaaaagagaaacttttgttcataatttcgaaaacatatgttcttttcatttcgctttattcttgaaaatccttat |
23606683 |
T |
|
| Q |
226 |
aaaacatatttagaatctgatgtcagctttaattataa |
263 |
Q |
| |
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|||||||| | ||| ||||||||||||||||||||||| |
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| T |
23606684 |
aaaacatactcagagtctgatgtcagctttaattataa |
23606721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 23583567 - 23583624
Alignment:
| Q |
30 |
tataatctatgtatttaatcacaaagacacagagttgttatgcctagatactatatgc |
87 |
Q |
| |
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|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
23583567 |
tataatctatctattttatcacaaagacacaaagttgttatgcctagatactatatgc |
23583624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 23576831 - 23576898
Alignment:
| Q |
18 |
aaaatttagatctataatctatgtatttaatcacaaagacacagagttgttatgcctagatactatat |
85 |
Q |
| |
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||||||| ||||||| ||||| |||||||| ||||||||||| |||||| ||||||||||||||||| |
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|
| T |
23576831 |
aaaattttcatctatagtctatttatttaattacaaagacacaaagttgtcatgcctagatactatat |
23576898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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