View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14314_low_1 (Length: 560)

Name: NF14314_low_1
Description: NF14314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14314_low_1
NF14314_low_1
[»] chr8 (3 HSPs)
chr8 (1-543)||(9572370-9572912)
chr8 (408-457)||(6950208-6950257)
chr8 (425-457)||(29972965-29972997)
[»] chr6 (2 HSPs)
chr6 (417-460)||(32408827-32408870)
chr6 (411-455)||(30004777-30004821)
[»] chr7 (2 HSPs)
chr7 (416-457)||(753353-753394)
chr7 (423-455)||(47303647-47303679)
[»] chr4 (2 HSPs)
chr4 (416-455)||(24929373-24929412)
chr4 (418-455)||(8422988-8423025)
[»] chr3 (3 HSPs)
chr3 (417-456)||(43116578-43116617)
chr3 (470-516)||(28306128-28306174)
chr3 (411-455)||(37308216-37308260)
[»] chr2 (1 HSPs)
chr2 (417-455)||(9477860-9477898)
[»] chr5 (4 HSPs)
chr5 (470-527)||(9703283-9703340)
chr5 (454-514)||(41016132-41016193)
chr5 (468-516)||(14257433-14257481)
chr5 (417-461)||(39257531-39257575)


Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 9572370 - 9572912
Alignment:
Q  1 agaagtagcgttatcagcgtttaaacagctctttccagctgtctcaaaaccttccctagaaattgtatcgaactcggaaaagacatcttgaccactaact 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572370 agaagtagcgttatcagtgtttaaacagctctttccagctgtctcaaaaccttccctagaaattgtatcgaactcggaaaagacatcttgaccactaact 9572469  T
Q  101 ttttcggagggaacattagttaagatagaactccaagggcttgacattaaggtttggcaatctacatttgtagtaccactacaaagacttacttctccag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572470 ttttcggagggaacattagttaagatagaactccaagggcttgacattaaggtttggcaatctacatttgtagtaccactacaaagacttacttctccag 9572569  T
Q  201 ttgaattatgatcaggtgaaggtttccaccaaggaagaagtttcaatatcaagtaatcaataagctcagctatgaaagccacatcatgatctgccagctc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572570 ttgaattatgatcaggtgaaggtttccaccaaggaagaagtttcaatatcaagtaatcaataagctcagctatgaaagccacatcatgatctgccagctc 9572669  T
Q  301 caaatgttcaaccatctccgaggccacggaaactgcagtatctgcatcaaggtaaaagagaaaatgtatattccgtactcgacctgcaagtaacacaaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572670 caaatgttcaaccatctccgaggccacggaaactgcagtatctgcatcaaggtaaaagagaaaatgtatattccgtactcgacctgcaagtaacacaaca 9572769  T
Q  401 agaacattttaggcactgtttcgataaacaacttaattgagtgtttatagcataaactatttcaataacaaaataaattcaaactgttcccatataaggt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9572770 agaacattttaggcactgtttcgataaacaacttaattgagtgtttatagcataaactatttcaataacaaaataaattcaaactgttctcatataaggt 9572869  T
Q  501 acaagttgttttcataggttatttctagaaagcgtatagatat 543  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9572870 acaagttgttttcataggttatttctagaaagcgtatagatat 9572912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 6950208 - 6950257
Alignment:
Q  408 tttaggcactgtttcgataaacaacttaattgagtgtttatagcataaac 457  Q
    |||||||| ||||| |||||||||||||||| |||| |||||||||||||    
T  6950208 tttaggcattgtttagataaacaacttaattaagtgcttatagcataaac 6950257  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 457
Target Start/End: Original strand, 29972965 - 29972997
Alignment:
Q  425 taaacaacttaattgagtgtttatagcataaac 457  Q
    |||||||||||||||||||||||||||||||||    
T  29972965 taaacaacttaattgagtgtttatagcataaac 29972997  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 32408827 - 32408870
Alignment:
Q  417 tgtttcgataaacaacttaattgagtgtttatagcataaactat 460  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  32408827 tgtttcgataaacaacttaattaagtgtttatagcataaactat 32408870  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 455
Target Start/End: Original strand, 30004777 - 30004821
Alignment:
Q  411 aggcactgtttcgataaacaacttaattgagtgtttatagcataa 455  Q
    |||| |||||| ||||||||| ||||||||||| |||||||||||    
T  30004777 aggctctgtttggataaacaatttaattgagtgcttatagcataa 30004821  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 457
Target Start/End: Complemental strand, 753394 - 753353
Alignment:
Q  416 ctgtttcgataaacaacttaattgagtgtttatagcataaac 457  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  753394 ctgtttggataaacaacttaattaagtgtttatagcataaac 753353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 455
Target Start/End: Complemental strand, 47303679 - 47303647
Alignment:
Q  423 gataaacaacttaattgagtgtttatagcataa 455  Q
    |||||||||||||||||||||||||||| ||||    
T  47303679 gataaacaacttaattgagtgtttatagtataa 47303647  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 455
Target Start/End: Original strand, 24929373 - 24929412
Alignment:
Q  416 ctgtttcgataaacaacttaattgagtgtttatagcataa 455  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  24929373 ctgtttggataaacaacttaattgagtgtttataacataa 24929412  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 455
Target Start/End: Complemental strand, 8423025 - 8422988
Alignment:
Q  418 gtttcgataaacaacttaattgagtgtttatagcataa 455  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  8423025 gtttggataaacaacttaattaagtgtttatagcataa 8422988  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 456
Target Start/End: Complemental strand, 43116617 - 43116578
Alignment:
Q  417 tgtttcgataaacaacttaattgagtgtttatagcataaa 456  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  43116617 tgtttggataaacaacttaatttagtgtttatagcataaa 43116578  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 516
Target Start/End: Original strand, 28306128 - 28306174
Alignment:
Q  470 aaaataaattcaaactgttcccatataaggtacaagttgttttcata 516  Q
    |||||||| ||||||||||  |||||||| |||||||||||||||||    
T  28306128 aaaataaagtcaaactgttttcatataagttacaagttgttttcata 28306174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 37308260 - 37308216
Alignment:
Q  411 aggcactgtttcgataaacaacttaattgagtgtttatagcataa 455  Q
    |||| |||||| |||||||||||||||| |||| |||||||||||    
T  37308260 aggccctgtttggataaacaacttaattaagtgcttatagcataa 37308216  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 455
Target Start/End: Original strand, 9477860 - 9477898
Alignment:
Q  417 tgtttcgataaacaacttaattgagtgtttatagcataa 455  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  9477860 tgtttggataaacaacttaattaagtgtttatagcataa 9477898  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 9703340 - 9703283
Alignment:
Q  470 aaaataaattcaaactgttcccatataaggtacaagttgttttcataggttatttcta 527  Q
    |||||||| |||||||  |  |||||||| ||||||||||||||||| ||||||||||    
T  9703340 aaaataaagtcaaactcatttcatataagctacaagttgttttcataagttatttcta 9703283  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 514
Target Start/End: Original strand, 41016132 - 41016193
Alignment:
Q  454 aaactatttcaataacaaaa-taaattcaaactgttcccatataaggtacaagttgttttca 514  Q
    |||||||||| ||| ||||| |||||||||||||||  |||||||| || ||||||||||||    
T  41016132 aaactatttctatagcaaaaataaattcaaactgttttcatataagctataagttgttttca 41016193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 516
Target Start/End: Original strand, 14257433 - 14257481
Alignment:
Q  468 acaaaataaattcaaactgttcccatataaggtacaagttgttttcata 516  Q
    |||||||||||||||| |||| ||||||||| || ||| ||||||||||    
T  14257433 acaaaataaattcaaaatgtttccatataagttataaggtgttttcata 14257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 39257575 - 39257531
Alignment:
Q  417 tgtttcgataaacaacttaattgagtgtttatagcataaactatt 461  Q
    ||||| |||||||||||||||| || | |||||||||||||||||    
T  39257575 tgtttggataaacaacttaattaagcgcttatagcataaactatt 39257531  T

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