View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14314_low_13 (Length: 251)
Name: NF14314_low_13
Description: NF14314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14314_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 1280493 - 1280730
Alignment:
| Q |
1 |
cggaaaaggcatttacctcctaattttattggataatgctggttttagcgnnnnnnnnttatagcgaacttatcccgaagtcattcccattggccatgta |
100 |
Q |
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| T |
1280493 |
cggaaaaggcatttacctcctaattttattggataatgctggttttagcgaaaaaaaattatagcgaacttatcccgaagtcattcccattggccatgta |
1280592 |
T |
|
| Q |
101 |
tcgatgttttccacctaagtcctagttaaaactgcctcatgtattctatgcacaactgtaaataaggacacatcgtcttcgtgaaatttcccgacttgtt |
200 |
Q |
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| T |
1280593 |
tcgatgttttccgcctaagtcctagttaaaactgcctcatgtattctatgcacaactgtaaataaggacacatcatcttcgtgaaatttcccgacttgtt |
1280692 |
T |
|
| Q |
201 |
ttctcgcgatatatagcagtccccaattttatttagaa |
238 |
Q |
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| T |
1280693 |
ttctcgcgatatataacagtccccaattttatttagaa |
1280730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 218
Target Start/End: Complemental strand, 46512687 - 46512529
Alignment:
| Q |
59 |
ttatagcgaacttatcccgaagtcattcccattggccatgtatcgatgttttccacctaagtcctagttaaaactgcctcatgtattctatgcacaactg |
158 |
Q |
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| T |
46512687 |
ttatagggaaattatcccaaagtcattcccattggc-atgtttccatgttttccacccaagtcctagttaaaattgcctcatgtagtctatgcacaactc |
46512589 |
T |
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| Q |
159 |
taaataaggacacatcgtcttcgtgaaatttcccgacttgttttctcgcgatatatagca |
218 |
Q |
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| T |
46512588 |
taaatagcgacacgtcgtccttgtggaattttccgaccgattttctcacgatgtatagca |
46512529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 14088863 - 14088892
Alignment:
| Q |
1 |
cggaaaaggcatttacctcctaattttatt |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
14088863 |
cggaaaaggcatttacctcctaattttatt |
14088892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 14398881 - 14398910
Alignment:
| Q |
1 |
cggaaaaggcatttacctcctaattttatt |
30 |
Q |
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| T |
14398881 |
cggaaaaggcatttacctcctaattttatt |
14398910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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