View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14314_low_14 (Length: 247)
Name: NF14314_low_14
Description: NF14314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14314_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 134873 - 134645
Alignment:
| Q |
1 |
caatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
134873 |
caatgatctccttcatcttctggcattcatacacaccaattaaccacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatc |
134774 |
T |
|
| Q |
101 |
attgcacttatagatgattatcatttgtaaacactcaaatccttgacaatggtttttccaaatgtgcttcagttttggaagagacttcaatattaagaac |
200 |
Q |
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|||||||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
134773 |
attgcactcatagatgattatcaattgtaaacaatcgaatccttgacaatggtttttccaaatgtgcttcagttttggaagagaaagcaattttaagaac |
134674 |
T |
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| Q |
201 |
aatagctcccactgcaacatgctatcagt |
229 |
Q |
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| T |
134673 |
actagctcccactgcaacatgctatcagt |
134645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 157391 - 157166
Alignment:
| Q |
1 |
caatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
157391 |
caatgatctccttcatcttctggcattcatacacaccgataaaccacaaatttggaatgcttgtgagcacggaaacatccagaagaacatattccaaatc |
157292 |
T |
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| Q |
101 |
attgcacttatagatgattatcatttgtaaacactcaaatccttgac----aatggtttttccaaatgtgcttcagttttggaagagacttcaatattaa |
196 |
Q |
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| T |
157291 |
attgcagtccttgatgattaacaattctaaacactcgaatccttgacaattaatgatttttccaaatgtgcttcagttttggaagagaaaacaattttaa |
157192 |
T |
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| Q |
197 |
gaacaatagctcccactgcaacatgc |
222 |
Q |
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|||||||||||||||||||||||||| |
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| T |
157191 |
gaacaatagctcccactgcaacatgc |
157166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34377383 - 34377151
Alignment:
| Q |
1 |
caatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatc |
100 |
Q |
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||||||||||||||||||||| ||||||| |||||| ||| ||| |||| |||||| |||||||| ||||||||||||||||| |||||||||||||| |
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| T |
34377383 |
caatgatctccttcatcttctcgcattcagacacatgaatcgacatcaaacttggaaggcttgtgaccacggaaacatccggaatcacatattccaaatc |
34377284 |
T |
|
| Q |
101 |
attgcacttatagatgattatcatttgtaaacactcaaatc------cttgacaatggtttttccaaatgtgcttcagttttggaagagacttcaatatt |
194 |
Q |
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||||||||| | ||| ||||| ||||||| || | || | ||||| ||| |||||||| ||||||||||||||||||||| | | ||| || |
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| T |
34377283 |
attgcacttcttgatccttatctcttgtaaatacccgaaccttaaagtttgaccatgatttttccagatgtgcttcagttttggaagacaatacaaattt |
34377184 |
T |
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| Q |
195 |
aagaacaatagctcccactgcaacatgctatca |
227 |
Q |
| |
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|||| | ||| || |||||||| ||||||||| |
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| T |
34377183 |
aagacctctagttcacactgcaagatgctatca |
34377151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 34549998 - 34550186
Alignment:
| Q |
2 |
aatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatca |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||| ||| |||| |||||| |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
34549998 |
aatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatccggaatcacatattccaaatca |
34550097 |
T |
|
| Q |
102 |
ttgcacttatagatgattatcatttgtaaacactcaaatc------cttgacaatggtttttccaaatgtgcttcagttttggaagaga |
184 |
Q |
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|||||||| | ||| ||||| || ||||||| | || | ||||| ||| |||||||| ||||||||||||||||||||||| |
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| T |
34550098 |
ttgcacttcttgatccttatctcttctaaacacccgaaccttaaagtttgaccatgatttttccatatgtgcttcagttttggaagaga |
34550186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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